PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04296.1.g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRAS | ||||||||
Protein Properties | Length: 552aa MW: 59485.2 Da PI: 4.6218 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 195.8 | 2.7e-60 | 117 | 487 | 3 | 373 |
GRAS 3 elLlecAeavssgdlelaqalLarlsel....aspdgd...........pmqRlaayfteALaarlarsvselykalppse 68 +lL++cA av+++d + a+a+L+r+ l + + + la yf+++L++r+++ + + ++ Zmw_sc04296.1.g00040.1.am.mk 117 NLLVACAMAVEARDSTTASAILSRVDSLlthgV----ShrsyhhaavdsASDILAGYFARGLHSRMSS---GARR----TA 186 79**********************998855432....222345566666888999************9...2222....22 PP GRAS 69 tseknsseelaalklfsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgv 147 +++ ++++ a+ +++e+sP++kf+h+taNqaIlea++ + +H++D+++++G+QW++L+ La R++g+ ++R+T+v Zmw_sc04296.1.g00040.1.am.mk 187 AAPALPENRMPAYWALQELSPFIKFAHFTANQAILEAAAADngPDLHVVDLNVGEGVQWASLMADLA-RTGGKSTFRLTAV 266 2223356789999***********************998886789*********************9.68*********** PP GRAS 148 gspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevL 228 ++ + ++ L++fAe+l++pf+++ l+ ++ edl+ + + ++ +++++ + s+ + ++ +L Zmw_sc04296.1.g00040.1.am.mk 267 ITDP--DAGRGCMAARWLSEFAESLNLPFRYSSLHLRDEEDLHSFAAESCNDSPVIISCDTTDCSYS----SVIKLQTLLL 341 9932..66666777888*****************999888888877788889999999988555554....44445579** PP GRAS 229 klvkslsPkvvvvveqe....adhnse.......sFlerflealeyysalfdsleaklpres..eerikvErellgreivn 296 + vk l+Pk+vv++e e +n++ sF+e f +al++++a++dsl++++ vEre+lg +i++ Zmw_sc04296.1.g00040.1.am.mk 342 RSVKILQPKLVVLIEDEllriGRTNQStpglalgSFAEFFRDALHHFAAVLDSLASGFCDGGygACLDLVEREMLGLRIED 422 *****************65532334449999999********************999988877788899************ PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +va +a+ + ++ G++p ls+++++qak+l+ ++ +g+ v +e g l l+W+++pL+svS+W Zmw_sc04296.1.g00040.1.am.mk 423 AVARYQAA-----------AMTGDMQGLRPCDLSSFNVAQAKMLVGLFS-RGFGVVHEAGRLALCWNSKPLTSVSVW 487 ****9999...........3455789***********************.*************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 28.287 | 89 | 469 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.4E-58 | 117 | 487 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 552 aa Download sequence Send to blast |
METMSYPSSP FIPFLPTHHE ESSYSYLLWS HQVAIAGPET GNMCAAHPIP SPDEQQDDNE 60 LIDMLFREAS HLLQDDLSNG GDPFASLDGC LCLAGQENVS MVATVQEEPV EGDSLGNLLV 120 ACAMAVEARD STTASAILSR VDSLLTHGVS HRSYHHAAVD SASDILAGYF ARGLHSRMSS 180 GARRTAAAPA LPENRMPAYW ALQELSPFIK FAHFTANQAI LEAAAADNGP DLHVVDLNVG 240 EGVQWASLMA DLARTGGKST FRLTAVITDP DAGRGCMAAR WLSEFAESLN LPFRYSSLHL 300 RDEEDLHSFA AESCNDSPVI ISCDTTDCSY SSVIKLQTLL LRSVKILQPK LVVLIEDELL 360 RIGRTNQSTP GLALGSFAEF FRDALHHFAA VLDSLASGFC DGGYGACLDL VEREMLGLRI 420 EDAVARYQAA AMTGDMQGLR PCDLSSFNVA QAKMLVGLFS RGFGVVHEAG RLALCWNSKP 480 LTSVSVWSRP VLDPGVAMPC SVNDTSDLRS IEAEVSRTQV ASQAVLFRAL VFGFSAGGEM 540 STCRTEVART DL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 7e-28 | 106 | 488 | 10 | 379 | Protein SCARECROW |
5b3h_A | 7e-28 | 106 | 488 | 9 | 378 | Protein SCARECROW |
5b3h_D | 7e-28 | 106 | 488 | 9 | 378 | Protein SCARECROW |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809511.1 | 0.0 | nodulation-signaling pathway 2 protein-like isoform X2 | ||||
TrEMBL | A0A2S3H639 | 0.0 | A0A2S3H639_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ca00212.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7684 | 32 | 50 |