PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04284.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 656aa MW: 69327.8 Da PI: 11.3195

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04284.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	30.4	4.9e-10	337	394	2	58
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svs 58 ++lL ++A av++g+++ a a La l+ a+p+gd+ qRl+a++t AL++r+ s++ Zmw_sc04284.1.g00040.1.am.mk 337 RQLLSDAAAAVADGNQTVAAAHLAVLKISANPRGDAEQRLVAMMTGALSSRVGPpSSQ 394 6899***********************************************9874444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	1.7E-7	337	394	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 656 aa Download sequence Send to blast
MLSSPAPVPP IGQIRPAAVV APRRQRHCCR TGVLASDPKQ SQEYINIRPT LLSFSSRSTL 60 LFVPPPLSAA SAPGFSGMEP AGWCDPRRRA YGYGYGVGSA VDAPPMMRQQ QHPPAASRPD 120 AAAGATGSVL KRSLSEMERW QQALCLRAVK QRTAAPVPPG HHQLDIGAVL AGAASARARG 180 LSGQPSAGFA GPSPQPSSTL SSLTTASPMQ QLWQRQVMAA PSAPVAKGAA ATARPTTARE 240 MVLLRELEKQ LLGDDEEVEA EAAGSVCGSA VTNSGWGETI HELNSIAATP LPSHPKTMTA 300 TNRYNTVPMS RSPSNSTSSA TSSTASSSPP TSAASSRQLL SDAAAAVADG NQTVAAAHLA 360 VLKISANPRG DAEQRLVAMM TGALSSRVGP PSSQHLVDLC GGEQRAACQL LHDGVADRVK 420 ARLGPARPGF DVKLDNGRLG VGWMGRVVTV ASAWWKVGKH RDSRWAAFVR TEWNALYLRR 480 EARKRRVPAG VRVSEAKPRR GARARAHATA CTRVLTARMW GFDFNLHRVS EVPCERTSVS 540 SRAVARQAAE FQACRWLNGP PFRLLLSTLG PRTSLSCLIR PFLFQLSLNL RGLSVGWLRQ 600 LDGGSLSPSP DATAETKRGG DAYGTQRLVR LGHAGEGRFK NASLVGCSSS GGHGTA

Sequence ? help Back to Top

Protein Sequence Length: 656 aa Download sequence Send to blast

MLSSPAPVPP IGQIRPAAVV APRRQRHCCR TGVLASDPKQ SQEYINIRPT LLSFSSRSTL  60
LFVPPPLSAA SAPGFSGMEP AGWCDPRRRA YGYGYGVGSA VDAPPMMRQQ QHPPAASRPD  120
AAAGATGSVL KRSLSEMERW QQALCLRAVK QRTAAPVPPG HHQLDIGAVL AGAASARARG  180
LSGQPSAGFA GPSPQPSSTL SSLTTASPMQ QLWQRQVMAA PSAPVAKGAA ATARPTTARE  240
MVLLRELEKQ LLGDDEEVEA EAAGSVCGSA VTNSGWGETI HELNSIAATP LPSHPKTMTA  300
TNRYNTVPMS RSPSNSTSSA TSSTASSSPP TSAASSRQLL SDAAAAVADG NQTVAAAHLA  360
VLKISANPRG DAEQRLVAMM TGALSSRVGP PSSQHLVDLC GGEQRAACQL LHDGVADRVK  420
ARLGPARPGF DVKLDNGRLG VGWMGRVVTV ASAWWKVGKH RDSRWAAFVR TEWNALYLRR  480
EARKRRVPAG VRVSEAKPRR GARARAHATA CTRVLTARMW GFDFNLHRVS EVPCERTSVS  540
SRAVARQAAE FQACRWLNGP PFRLLLSTLG PRTSLSCLIR PFLFQLSLNL RGLSVGWLRQ  600
LDGGSLSPSP DATAETKRGG DAYGTQRLVR LGHAGEGRFK NASLVGCSSS GGHGTA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025812574.1	6e-93	scarecrow-like protein 8
TrEMBL	A0A0A9FCJ7	3e-98	A0A0A9FCJ7_ARUDO; Uncharacterized protein
STRING	Pavir.Aa00944.1.p	4e-82	(Panicum virgatum)