PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04282.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GATA

Protein Properties

Length: 614aa MW: 66617.2 Da PI: 10.7061

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04282.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	54.7	1.4e-17	513	547	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + kTp+WR gp g+ktLCnaCG+++++ +l Zmw_sc04282.1.g00030.1.am.mk 513 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 547 *******************************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	3.5E-16	507	557	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	1.66E-13	511	571	No hit	No description
PROSITE profile	PS50114	11.227	511	543	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	3.6E-13	511	545	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	1.94E-11	512	559	No hit	No description
Pfam	PF00320	2.2E-15	513	547	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	513	538	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 614 aa Download sequence Send to blast
MDRGRRRTGG REGNGHRGVH VSDTRLLRGS VQAVSVRWRR LSWGSDNELR EGGGGGIFRR 60 VRSVVMHSLA VAAAPVSSCV CTIYGHYAAN KSIRTLEYFF FLAGCTPDYR HRLFQRVLRF 120 YFAADVLDRP GPAAGKEAMR PARPQCPCLG VLLKREAGVV EKKVNARWRG QEVPRAPALH 180 VALTSAQPPF TCGNYHRHFP CQQKQTAAAA NQIHRRLAPP HRAPKQHADA GAREQSGRGI 240 RLCSVPARKK KDSSMDPAPR ARTLSPSQTR TPDCGAHGNG RRRDALNCAR RERQRLARGR 300 AANEGRAPPR NGSRFLRTPG GDEREGQKST GRLTILGAWA WQTIPPPCHC VRTTPGPARR 360 SCPRMASEWE MAAMGVDLGM GMSAYHHHHH HHNASGITTA PMSSHDGGGG GGYSTAHHHY 420 YGMAPVGDAM RVDDLLDLSN TGAHEFFPTA AAAATENGHH SGAMCEPSPK GNSSDHQTSF 480 PSFTDEFYIP DPGPGGAAAA GEAGLEGGGV RRCTHCASEK TPQWRTGPLG PKTLCNACGV 540 RFKSGRLVPE YRPAASPTFV LTQHSNSHRK VMELRRQKEL LMIRGSHRDA AAAAAAAGTA 600 GPRPDLMFRD YGVC

Sequence ? help Back to Top

Protein Sequence Length: 614 aa Download sequence Send to blast

MDRGRRRTGG REGNGHRGVH VSDTRLLRGS VQAVSVRWRR LSWGSDNELR EGGGGGIFRR  60
VRSVVMHSLA VAAAPVSSCV CTIYGHYAAN KSIRTLEYFF FLAGCTPDYR HRLFQRVLRF  120
YFAADVLDRP GPAAGKEAMR PARPQCPCLG VLLKREAGVV EKKVNARWRG QEVPRAPALH  180
VALTSAQPPF TCGNYHRHFP CQQKQTAAAA NQIHRRLAPP HRAPKQHADA GAREQSGRGI  240
RLCSVPARKK KDSSMDPAPR ARTLSPSQTR TPDCGAHGNG RRRDALNCAR RERQRLARGR  300
AANEGRAPPR NGSRFLRTPG GDEREGQKST GRLTILGAWA WQTIPPPCHC VRTTPGPARR  360
SCPRMASEWE MAAMGVDLGM GMSAYHHHHH HHNASGITTA PMSSHDGGGG GGYSTAHHHY  420
YGMAPVGDAM RVDDLLDLSN TGAHEFFPTA AAAATENGHH SGAMCEPSPK GNSSDHQTSF  480
PSFTDEFYIP DPGPGGAAAA GEAGLEGGGV RRCTHCASEK TPQWRTGPLG PKTLCNACGV  540
RFKSGRLVPE YRPAASPTFV LTQHSNSHRK VMELRRQKEL LMIRGSHRDA AAAAAAAGTA  600
GPRPDLMFRD YGVC

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4621	29	55