PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04272.1.g00050.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 753aa    MW: 81911.3 Da    PI: 6.752
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04272.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.71.3e-201671156
                                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                  r++ +++t+ q+++Le++F+++++p++++r+ L+++lgL+ rq+k+WFqNrR+++k
  Zmw_sc04272.1.g00050.1.sm.mk 16 RKRYHRHTPRQIQQLEAMFKECPHPDENQRAALSRELGLEPRQIKFWFQNRRTQMK 71
                                  688899***********************************************998 PP
2START155.15.6e-492194423205
                                   HHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT CS
                         START   3 aeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqW 72 
                                   a +a++el+++a+a++ +Wvk +     e +n  ++  +f+++++       ++e +r+sg+v+m ++ lv  ++d+  +W
  Zmw_sc04272.1.g00050.1.sm.mk 219 AARALDELIRLAQAGDHVWVKGPpgderETLNAATYDGIFSKTGAgfrppdINVEGSRDSGLVFMSAVALVDVFMDTH-KW 298
                                   67899******************9999999999999999988887******9**************************.** PP

                                   -TT-S....EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSE CS
                         START  73 detla....kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvv 143
                                    e ++    ka t++v+ +g     + l  m+ el  ++p+vp R+f f+Ry++q ++g w+ivdvS+d +++     +  
  Zmw_sc04272.1.g00050.1.sm.mk 299 MEFFPgivsKAHTVDVLVNGmcgrnESLIMMYEELHIMTPVVPtREFCFLRYCKQIEQGLWAIVDVSTDGQREAHYGVPPS 379
                                   **********************************************************************99998888889 PP

                                   E-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                         START 144 RaellpSgiliepksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqce 205
                                   R+++lpSg+li +++ng+skvtwveh++ +  lp   l+r lv sg+a+ga +wva+lqr c 
  Zmw_sc04272.1.g00050.1.sm.mk 380 RSRRLPSGCLIADMANGYSKVTWVEHMEIEQMLPiNVLYRNLVLSGAAFGAHRWVAALQRACD 442
                                   **********************************999***********************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.22E-20976IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-221078IPR009057Homeodomain-like
PROSITE profilePS5007117.8641373IPR001356Homeobox domain
SMARTSM003899.6E-201477IPR001356Homeobox domain
CDDcd000862.50E-191574No hitNo description
PfamPF000464.2E-181671IPR001356Homeobox domain
PROSITE patternPS0002704871IPR017970Homeobox, conserved site
SuperFamilySSF559613.3E-30208444No hitNo description
PROSITE profilePS5084844.402208446IPR002913START domain
CDDcd088756.53E-103212441No hitNo description
SMARTSM002342.5E-34217443IPR002913START domain
PfamPF018521.8E-41219442IPR002913START domain
Gene3DG3DSA:3.30.530.202.8E-6279424IPR023393START-like domain
SuperFamilySSF559611.18E-6463551No hitNo description
SuperFamilySSF559611.18E-6606738No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009828Biological Processplant-type cell wall loosening
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 753 aa     Download sequence    Send to blast
MDFGDEPEGS DSQRRRKRYH RHTPRQIQQL EAMFKECPHP DENQRAALSR ELGLEPRQIK  60
FWFQNRRTQM KAQHERADNC FLRAENDKIR CENITMSEAL KNVICPNCGG PPVAEDFFDE  120
QKLRMENARL KEELDRVSSI TSKYLGRPFT QMPPMPTMSA SSLDLSVGGM PGPAFGGPGL  180
DLDLLGGGSA GPGMCPSGLP FQMPAPVTEM ERPMMIDTAA RALDELIRLA QAGDHVWVKG  240
PPGDERETLN AATYDGIFSK TGAGFRPPDI NVEGSRDSGL VFMSAVALVD VFMDTHKWME  300
FFPGIVSKAH TVDVLVNGMC GRNESLIMMY EELHIMTPVV PTREFCFLRY CKQIEQGLWA  360
IVDVSTDGQR EAHYGVPPSR SRRLPSGCLI ADMANGYSKV TWVEHMEIEQ MLPINVLYRN  420
LVLSGAAFGA HRWVAALQRA CDRVASLAAL GVPHHDPSGV TAEGKRGMMK LSQRMVSCFC  480
ASLTSSPLQL WTTLSGTTDV SVRVSTYRSA DLGQHSGVVL GAAASIWLPV PSEHVFAFVR  540
DESTRSQVHV HTYRVRSRRL RHFINNARGG VDVVTTSSCR ATSLTDVSLS SPLLPQWDVL  600
AHGNQVQEVS HISSGSNAGN CISLLRGLNS SQNSRLILQE SCTDASGSMV VYSPIDLLAA  660
NVVMSGEDPS GIPLLPSGFA ILPDGRPGTG SGASSSAGPP LAPPPVSLVT VAFQIVVSSL  720
PSSRLNEESV STINSLVTST VQNIRAALNC TGP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00232DAPTransfer from AT1G73360Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438026.10.0homeobox-leucine zipper protein ROC8
SwissprotQ69T580.0ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLC5Z6D60.0C5Z6D6_SORBI; Uncharacterized protein
STRINGSb10g006820.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29123770