PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04269.1.g00060.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 536aa    MW: 58268.7 Da    PI: 8.2343
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04269.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.5e-18215270256
                                   T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   ++++++t+eq+++Le  Fe+ ++++  e+++eLA++lg+  rqV vWFqNrRa+++
  Zmw_sc04269.1.g00060.1.am.mk 215 KTKRRLTAEQVQALEVSFEEeKQKLEPERKRELARRLGIAPRQVAVWFQNRRARWR 270
                                   67889**************98**********************************9 PP
2HD-ZIP_I/II114.66.2e-37216307292
                   HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                    krrl++eqv++LE sFeee+ kLeperK elar+Lg+ prqvavWFqnrRAR++tkqlE+d+ +L+ a+d+l + +++L 
  Zmw_sc04269.1.g00060.1.am.mk 216 TKRRLTAEQVQALEVSFEEEKqKLEPERKRELARRLGIAPRQVAVWFQNRRARWRTKQLEQDFYSLRVAHDELLAGRDALV 296
                                   69****************9988*********************************************************** PP

                   HD-ZIP_I/II  82 keveeLreelk 92 
                                   +++++Lr+++ 
  Zmw_sc04269.1.g00060.1.am.mk 297 ADNDRLRSQVI 307
                                   *******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.52E-16210274IPR009057Homeodomain-like
PROSITE profilePS5007117.508211272IPR001356Homeobox domain
SMARTSM003891.4E-16213276IPR001356Homeobox domain
PfamPF000461.8E-15215270IPR001356Homeobox domain
CDDcd000861.70E-15215273No hitNo description
Gene3DG3DSA:1.10.10.601.8E-18218277IPR009057Homeodomain-like
PRINTSPR000311.5E-5243252IPR000047Helix-turn-helix motif
PROSITE patternPS000270247270IPR017970Homeobox, conserved site
PRINTSPR000311.5E-5252268IPR000047Helix-turn-helix motif
PfamPF021832.9E-11272314IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MICRRQANSC VTLTRRIKHE HHRDPITTNF HFILLLARPS TRGLSFRERL SATKSTLSSR  60
QLVIVSGRRV AQACTDETPI HPRRRCYGVV AVHHEVINDP HAVEHQLLPP QIPRRRVILP  120
IKLAPAGWTA TSVFQEEVEE RNSAASFCAT GGGGSGGQVL LFGGGGGFCG GAAPMAASAG  180
AENGRRKRPC LTAHEELRLD QLCGLEYELQ GVPEKTKRRL TAEQVQALEV SFEEEKQKLE  240
PERKRELARR LGIAPRQVAV WFQNRRARWR TKQLEQDFYS LRVAHDELLA GRDALVADND  300
RLRSQVINLT EKLQAKEQTA PSAATGTTAM EAAVLLVQLD DDQLRQTISG EVWPAQGFPG  360
GANSASPESY FAGAPSPPSS SEGDCGDEGS APLLPDAMLL AVAAQLEHGG GYDAGEDSWE  420
WQAGRTGLKK IIRLCTFNCF GSAGSGPTAG RGEVGDGTGP RFSRGPQGAS SFFSGGPSTR  480
ALNPLLHFRR APSIPDLAPR SMRRTSGSMD IISAVSVEME EEESHHAKGH VRMDYA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPavir.J04192.1.p1e-86(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127562735