PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04256.1.g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 300aa MW: 31923.9 Da PI: 9.4693 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.4 | 1.4e-17 | 19 | 64 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+ eEd llv++v+q+G ++W+ I++ ++ gR++k+c++rw + Zmw_sc04256.1.g00040.1.sm.mk 19 KGPWSIEEDALLVRLVEQHGANHWSVISAAIP-GRSGKSCRLRWCNQ 64 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 57.5 | 3.1e-18 | 73 | 115 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEd l++ a++ +G++ W++Iar+++ gRt++ +k++w++ Zmw_sc04256.1.g00040.1.sm.mk 73 PFTQEEDALILAAHAHYGNR-WAAIARHLP-GRTDNAIKNHWNSN 115 89******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.669 | 14 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.31E-32 | 16 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.6E-16 | 18 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-16 | 19 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-24 | 20 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.27E-14 | 21 | 63 | No hit | No description |
PROSITE profile | PS51294 | 26.749 | 66 | 120 | IPR017930 | Myb domain |
SMART | SM00717 | 4.0E-17 | 70 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-16 | 73 | 115 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.31E-14 | 73 | 116 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-23 | 73 | 119 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MDPMRANPAS MSASSGVKKG PWSIEEDALL VRLVEQHGAN HWSVISAAIP GRSGKSCRLR 60 WCNQLNPEVH HRPFTQEEDA LILAAHAHYG NRWAAIARHL PGRTDNAIKN HWNSNLRKSR 120 RRAAATAAAA AAVAIASTSR AAAPQVPFTG MLQGDNSNLT TAVPVAPQPT GWRRCVMSQG 180 QSSSEVIIPD ASANLVPNSN QSSVAHGPTV DPNTSLSLSL SLPVPPSNSH EAANKEPMEA 240 SIGMAENAIN NCSSSPSLMG GNAQLMAMIR QMVREEVQLQ TGQLAFSLRV EAASAKGHHQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 6e-38 | 19 | 119 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 6e-38 | 19 | 119 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022681066.1 | 1e-68 | transcription factor CSA-like | ||||
TrEMBL | A0A368QP48 | 7e-73 | A0A368QP48_SETIT; Uncharacterized protein | ||||
STRING | Si022959m | 1e-73 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13544 | 27 | 31 |