PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04238.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 493aa MW: 53703.8 Da PI: 6.6056

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04238.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	266.1	1.1e-81	133	492	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 + L+++A+a + g++ a+ +Larl+++ p g +p+ R a++++eAL + l++ + +++ ts+ +++ +laa+ Zmw_sc04238.1.g00010.1.am.mk 133 LDDLVAAAKAAEVGNFVGARLILARLNQQLPPIGgKPFLRSASCLKEALLTALND-----GNNGSSRLTSPLDVALKLAAY 208 5789***********************777776****************.....56667777777889*** PP GRAS 82 klfsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgske 156 k fs++sP+l+f+++ta qa+l+++ ++v iiDfd++ G+QW ++lq+La R+ + p++++T+++s++s++ Zmw_sc04238.1.g00010.1.am.mk 209 KSFSDISPVLQFANFTATQALLDEITCTtaSCVRIIDFDLGVGGQWSSFLQELAHRRdtggVSLPTFKLTAFVSSASHHPL 289 *******************98766569*******************9997765569************* PP GRAS 157 eleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsP 236 el+ t+e+L++fA+ lg+pf f+++ +le++++ eL ++ +E +aV+l ++ +l+ +L+lvk+l P Zmw_sc04238.1.g00010.1.am.mk 290 ELHLTRENLSQFANDLGIPFGFTAI---NLETFDPAELIASTaDEFVAVSLPVSCSIRT---PPLPM----LLQLVKQLAP 360 ********************9...99*99977777*****9665443...45555....****** PP GRAS 237 kvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWre 317 k+vv +++ d ++ +F ++f+++++ ++ l+dsl+a +++++++k+Er+l++++++++v + r e+++ Wr Zmw_sc04238.1.g00010.1.am.mk 361 KIVVAIDHGNDQSDLPFSQHFMNCFQSCMFLLDSLDAA-RTDADTASKIERFLIQPRVEDAVLGRR-----RVEKAMAWRT 435 *******************************998.5777**************98554.....6799** PP GRAS 318 rleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++++aGF pvpls+ a++qa++ll++v+++g++ve+ l l+W++ +Lvs+SaWr Zmw_sc04238.1.g00010.1.am.mk 436 AFTSAGFVPVPLSNLAEAQADCLLKRVQFRGFHVEKCGTDLALYWQRGELVSISAWR 492 ******************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	39.931	106	472	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.0E-79	133	492	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
STFGLLPTEA ALLPPPATTL PFDDGADIKR ALHGVPTPNL LLNQHHPMPA ASFVMPLPSF 60 PDHHQQPHLP PPPKRHHSMP DNLFLLNNQL PPPLPQCLPF PTLHTAAPFQ LQPSLQPPLD 120 AMKTTATAQQ QLLDDLVAAA KAAEVGNFVG ARLILARLNQ QLPPIGGKPF LRSASCLKEA 180 LLTALNDGNN GSSRLTSPLD VALKLAAYKS FSDISPVLQF ANFTATQALL DEITCTTASC 240 VRIIDFDLGV GGQWSSFLQE LAHRRDTGGV SLPTFKLTAF VSSASHHPLE LHLTRENLSQ 300 FANDLGIPFG FTAINLETFD PAELIASTAD EFVAVSLPVS CSIRTPPLPM LLQLVKQLAP 360 KIVVAIDHGN DQSDLPFSQH FMNCFQSCMF LLDSLDAART DADTASKIER FLIQPRVEDA 420 VLGRRRVEKA MAWRTAFTSA GFVPVPLSNL AEAQADCLLK RVQFRGFHVE KCGTDLALYW 480 QRGELVSISA WRC

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

STFGLLPTEA ALLPPPATTL PFDDGADIKR ALHGVPTPNL LLNQHHPMPA ASFVMPLPSF  60
PDHHQQPHLP PPPKRHHSMP DNLFLLNNQL PPPLPQCLPF PTLHTAAPFQ LQPSLQPPLD  120
AMKTTATAQQ QLLDDLVAAA KAAEVGNFVG ARLILARLNQ QLPPIGGKPF LRSASCLKEA  180
LLTALNDGNN GSSRLTSPLD VALKLAAYKS FSDISPVLQF ANFTATQALL DEITCTTASC  240
VRIIDFDLGV GGQWSSFLQE LAHRRDTGGV SLPTFKLTAF VSSASHHPLE LHLTRENLSQ  300
FANDLGIPFG FTAINLETFD PAELIASTAD EFVAVSLPVS CSIRTPPLPM LLQLVKQLAP  360
KIVVAIDHGN DQSDLPFSQH FMNCFQSCMF LLDSLDAART DADTASKIER FLIQPRVEDA  420
VLGRRRVEKA MAWRTAFTSA GFVPVPLSNL AEAQADCLLK RVQFRGFHVE KCGTDLALYW  480
QRGELVSISA WRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-23	208	492	80	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001168417.1	0.0	uncharacterized protein LOC100382187
TrEMBL	A0A3L6FPS3	0.0	A0A3L6FPS3_MAIZE; Scarecrow-like protein 6
STRING	GRMZM5G825321_P02	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2020	37	96