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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Zmw_sc04228.1.g00060.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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| Family | M-type_MADS | ||||||||
| Protein Properties | Length: 267aa MW: 29508.2 Da PI: 11.8396 | ||||||||
| Description | M-type_MADS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | SRF-TF | 85.9 | 2.4e-27 | 187 | 238 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-.EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCda.evaviifsstgklyeyss 51
krienk+ rqvtf+kRrng+lKKA+ELSvLCda eva+iifs++g+l+e+s+
Zmw_sc04228.1.g00060.1.am.mk 187 KRIENKISRQVTFAKRRNGLLKKAYELSVLCDAlEVALIIFSTRGRLFEFST 238
79******************************879***************96 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50066 | 29.815 | 179 | 240 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 1.8E-36 | 179 | 239 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 4.84E-26 | 179 | 245 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 7.24E-37 | 180 | 240 | No hit | No description |
| PRINTS | PR00404 | 1.8E-18 | 181 | 201 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 2.5E-22 | 188 | 236 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.8E-18 | 201 | 216 | IPR002100 | Transcription factor, MADS-box |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 267 aa Download sequence Send to blast |
LAKLCSCVCL RYGSPWTRNG LVIDSAPVLL ALADGTNVRL SSARRQAGWD GTRSSVVEPR 60 ARRGPGAQQR RTDDQGKARR ASAPCQPRRD GGRHVPPPPP PGQARVASPP LRRCRASAKT 120 ACVPASSMSY PRRHPRCLAG FVDTRREVGA ALQEEKARKS GREGNRPGAN LQLRLRRSMG 180 RGKVELKRIE NKISRQVTFA KRRNGLLKKA YELSVLCDAL EVALIIFSTR GRLFEFSTSS 240 WYSMTMASLM VPTCPRPAPA WDFLLLH |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1tqe_P | 6e-17 | 179 | 241 | 1 | 62 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 6e-17 | 179 | 241 | 1 | 62 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 6e-17 | 179 | 241 | 1 | 62 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 6e-17 | 179 | 241 | 1 | 62 | Myocyte-specific enhancer factor 2B |
| 6c9l_A | 6e-17 | 179 | 241 | 1 | 62 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 6e-17 | 179 | 241 | 1 | 62 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 6e-17 | 179 | 241 | 1 | 62 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 6e-17 | 179 | 241 | 1 | 62 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 6e-17 | 179 | 241 | 1 | 62 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 6e-17 | 179 | 241 | 1 | 62 | Myocyte-specific enhancer factor 2B |
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP42440 | 3 | 3 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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