PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04217.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 607aa MW: 67190.4 Da PI: 4.5787

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04217.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.3	5.2e-52	9	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratk 79 lp GfrFhPtdeelv +yLk+k++g+ +++evi+e+d++k+ePwdLp k +++++ ew+fF+++d+ky++g+r+nrat+ Zmw_sc04217.1.g00030.1.sm.mk 9 LPLGFRFHPTDEELVRHYLKRKITGQISSEAEVIPEIDVCKCEPWDLPvKsLIRSDDPEWFFFAPKDRKYPNGSRSNRATE 89 699**********************9999*************6346667888******************* PP NAM 80 sgyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 +gyWkatgkd+ ++sk k++ +g+kktLvf+kgrapkge+ W+mheyr Zmw_sc04217.1.g00030.1.sm.mk 90 AGYWKATGKDRVIKSKgdkrKQHIIGMKKTLVFHKGRAPKGERMGWIMHEYRT 142 ***********987666666*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-57	3	163	IPR003441	NAC domain
PROSITE profile	PS51005	56.452	9	163	IPR003441	NAC domain
Pfam	PF02365	6.0E-28	10	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 607 aa Download sequence Send to blast
MTVMELRALP LGFRFHPTDE ELVRHYLKRK ITGQISSEAE VIPEIDVCKC EPWDLPVKSL 60 IRSDDPEWFF FAPKDRKYPN GSRSNRATEA GYWKATGKDR VIKSKGDKRK QHIIGMKKTL 120 VFHKGRAPKG ERMGWIMHEY RTTEPEFECG EQGGYVLYRL FRKQEEKTER SSPEEMDKSG 180 YSPTPSRSSP DNIEANEEAF TALNKESPES TIHDSPINLP NSVEAHDVSL TRWLADRNDN 240 VAANAVNVSQ MSLSGHINGI AKVDPSAGGL AQLVDSQKQH GDPNHFAANS GSILQHEENA 300 FLTDSQQGHM GFGDNGELPD DQAWWEGLSF DPDEPNPQLS GLYDNTPLLP YDTTDPDVLS 360 MGSGAESIHD LFNNMEDSSG KRDGWSTEPA TKETGITVMP RQSQPSVQQN YLYPHQGTAY 420 RRIRLQESFS LDVESGESAT NVDCKDEASC IEYLDLVVEE STAEKGEASD EDDAESTGIT 480 IRSRRPAPSS SATSSCIVTE YLDEAMEEST AEKGSSDEDD AESTGITIRN ALKAVPEAKS 540 VPRLRKTSEK NDEVSKQEDG VGSPVRAPGK ERGFPSHIVL LVLSVALLLL LCVGGVWMSL 600 IAIQVDY

Sequence ? help Back to Top

Protein Sequence Length: 607 aa Download sequence Send to blast

MTVMELRALP LGFRFHPTDE ELVRHYLKRK ITGQISSEAE VIPEIDVCKC EPWDLPVKSL  60
IRSDDPEWFF FAPKDRKYPN GSRSNRATEA GYWKATGKDR VIKSKGDKRK QHIIGMKKTL  120
VFHKGRAPKG ERMGWIMHEY RTTEPEFECG EQGGYVLYRL FRKQEEKTER SSPEEMDKSG  180
YSPTPSRSSP DNIEANEEAF TALNKESPES TIHDSPINLP NSVEAHDVSL TRWLADRNDN  240
VAANAVNVSQ MSLSGHINGI AKVDPSAGGL AQLVDSQKQH GDPNHFAANS GSILQHEENA  300
FLTDSQQGHM GFGDNGELPD DQAWWEGLSF DPDEPNPQLS GLYDNTPLLP YDTTDPDVLS  360
MGSGAESIHD LFNNMEDSSG KRDGWSTEPA TKETGITVMP RQSQPSVQQN YLYPHQGTAY  420
RRIRLQESFS LDVESGESAT NVDCKDEASC IEYLDLVVEE STAEKGEASD EDDAESTGIT  480
IRSRRPAPSS SATSSCIVTE YLDEAMEEST AEKGSSDEDD AESTGITIRN ALKAVPEAKS  540
VPRLRKTSEK NDEVSKQEDG VGSPVRAPGK ERGFPSHIVL LVLSVALLLL LCVGGVWMSL  600
IAIQVDY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-45	8	164	16	166	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-45	8	164	16	166	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-45	8	164	16	166	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-45	8	164	16	166	NO APICAL MERISTEM PROTEIN
3swm_A	2e-45	8	164	19	169	NAC domain-containing protein 19
3swm_B	2e-45	8	164	19	169	NAC domain-containing protein 19
3swm_C	2e-45	8	164	19	169	NAC domain-containing protein 19
3swm_D	2e-45	8	164	19	169	NAC domain-containing protein 19
3swp_A	2e-45	8	164	19	169	NAC domain-containing protein 19
3swp_B	2e-45	8	164	19	169	NAC domain-containing protein 19
3swp_C	2e-45	8	164	19	169	NAC domain-containing protein 19
3swp_D	2e-45	8	164	19	169	NAC domain-containing protein 19
4dul_A	2e-45	8	164	16	166	NAC domain-containing protein 19
4dul_B	2e-45	8	164	16	166	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025820792.1	0.0	protein NTM1-like 9
TrEMBL	A0A0A9CTY0	0.0	A0A0A9CTY0_ARUDO; Uncharacterized protein
STRING	Pavir.Fb00405.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5172	38	59