PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04193.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 312aa MW: 33375.8 Da PI: 4.5811

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04193.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.4	1.7e-10	238	276	5	43
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaei 43 h + Er+RR+++N++f++Lr+llP++sk ++k ++ + Zmw_sc04193.1.g00010.1.am.mk 238 HMMSERKRREKLNDSFQTLRSLLPPCSKLHDKDVDRGSW 276 7899*********************97555555555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.325	233	287	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.14E-9	234	278	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-9	237	278	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.4E-8	238	277	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.20E-8	238	265	No hit	No description
SMART	SM00353	0.0048	239	283	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
PVASDLHRSM DEEVWCDLDL QLPANDVAGL HRAAHDDPFW PALADCTASF LSADDIDITG 60 SASDKVAVAN DMVLDVDTSY FAAEQHQDLL MVQQDQTYSS SPSSKRSFSV DDSAGTTSSP 120 FSFALDGADA ALTAGANFDP FAGDDAAIMR AMMAILSSAS PSSSESSSPP QSQELNMQQA 180 AAVHPPRRGG NNNNNGHVVA ARSINSFAVG AEKTNSAGGG RQQQDDASRA APSTQVYHMM 240 SERKRREKLN DSFQTLRSLL PPCSKLHDKD VDRGSWLEAQ EDQILKKRGP LKVQLDAWKL 300 PNGGSSLVVL IA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	241	246	ERKRRE
2	242	247	RKRREK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819658.1	6e-45	putative transcription factor bHLH041
TrEMBL	A0A0A9RPB9	1e-48	A0A0A9RPB9_ARUDO; Uncharacterized protein
STRING	Sb03g025860.1	2e-43	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP34498	3	4