PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04189.1.g00080.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

CO-like

Protein Properties

Length: 340aa MW: 36547.1 Da PI: 6.5673

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04189.1.g00080.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	16.8	1.4e-05	12	44	4	34
zf-B_box 4 rkCpeHeekelqlfCedCqq.llCedCllee.H 34 r+C +e ++ +C++C+ +lC C H Zmw_sc04189.1.g00080.1.sm.mk 12 RRCGACETAPAAVHCRTCGGvFLCTACDARPaH 44 79**************876****876555 PP
2	CCT	70.6	3.8e-24	262	305	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++ Zmw_sc04189.1.g00080.1.sm.mk 262 REARLMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRT 305 9*****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00021	8.16E-5	12	80	No hit	No description
SMART	SM00336	1.4E-5	21	80	IPR000315	B-box-type zinc finger
PROSITE profile	PS51017	16.896	262	304	IPR010402	CCT domain
Pfam	PF06203	6.0E-18	262	304	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MELHKYWGVG GRRCGACETA PAAVHCRTCG GVFLCTACDA RPAHAGAXXX XXXXAVLCAA 60 CDADIHEANP LARRHTRVPI APIGSAAAAA AVESMLFGTG EAAEEQKATE HHQHQHSLNL 120 NVEAKDMKLD YLFSDLDPYL NVELPRFQHA DSVVPNGVAV ELDFTGGVGV KPSSYSPYAA 180 TSLAHSGSSS EVGVVPDALC VGGGHGSFEL DFTRPKTQAY MPYTATPPSH SVTVSSVDAA 240 EVVPDQRGEA AAVPRPVTGE GREARLMRYR EKRKNRRFEK TIRYASRKAY AETRPRIKGR 300 FAKRTDNDGD GDDAEPEAEG TVPTASSYMF DFGYSVVPTF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001355037.1	1e-143	uncharacterized protein LOC100281837
TrEMBL	A0A3S6H646	1e-155	A0A3S6H646_9POAL; Constans-like protein
STRING	OPUNC06G21040.1	1e-144	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3844	23	48