PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04141.1.g00100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | G2-like | ||||||||
Protein Properties | Length: 203aa MW: 22595.7 Da PI: 9.9112 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 96.2 | 2.4e-30 | 17 | 67 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 kprlrWtp+LHerFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQ Zmw_sc04141.1.g00100.1.sm.mk 17 KPRLRWTPDLHERFVDAVTKLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQ 67 79************************************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.654 | 14 | 74 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-29 | 14 | 67 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-21 | 17 | 67 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 1.27E-13 | 17 | 68 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.8E-8 | 19 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 5.8E-10 | 81 | 107 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MQGTYGGGMA ALSRDPKPRL RWTPDLHERF VDAVTKLGGP DKATPKSVLR LMGMKGLTLY 60 HLKSHLQDSL HKASVSPPQR LLVQKKLQMR IEAQGKYLKA ILEKAHRNIT FDANGSGNIE 120 STRSQLTDFN LALSGFVDNA THVYEENKGQ LVKAISNDID NHKDHHLSFQ LYNAGSQEAK 180 DVKRTPETED TLLLDLNIKG GNN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-18 | 17 | 67 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-18 | 17 | 67 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-18 | 17 | 67 | 1 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-18 | 17 | 67 | 1 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-18 | 17 | 67 | 1 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-18 | 17 | 67 | 1 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-18 | 17 | 67 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-18 | 17 | 67 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-18 | 17 | 67 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-18 | 17 | 67 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-18 | 17 | 67 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-18 | 17 | 67 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021318852.1 | 7e-87 | myb family transcription factor PHL11 | ||||
Refseq | XP_021318853.1 | 7e-87 | myb family transcription factor PHL11 | ||||
Swissprot | C0SVS4 | 9e-42 | PHLB_ARATH; Myb family transcription factor PHL11 | ||||
TrEMBL | Q7XPT2 | 2e-87 | Q7XPT2_ORYSJ; OSJNBa0083N12.9 protein | ||||
STRING | OGLUM04G23960.1 | 3e-88 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3940 | 34 | 70 |
Publications ? help Back to Top | |||
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