PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04114.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | G2-like | ||||||||
Protein Properties | Length: 510aa MW: 55136.3 Da PI: 7.3708 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 98.7 | 4.1e-31 | 110 | 163 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+e+AtPk +l++m+v gL ++hvkSHLQ+YR+ Zmw_sc04114.1.g00010.1.am.mk 110 PRLRWTPDLHMAFVHAVERLGGQERATPKLVLQMMNVRGLNIAHVKSHLQMYRS 163 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.6E-29 | 106 | 164 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.49 | 106 | 166 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.11E-13 | 109 | 164 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-21 | 110 | 165 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.4E-8 | 111 | 162 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 510 aa Download sequence Send to blast |
MGDVKEKAVV EILEDDEKRS WRNSLPPVVL DLNESFLAEG SEDSDEVEED DDGGSTSEVA 60 GACRSSSNNS STNHNSGSNK NNDISSSSSK AEGSGERVPT VRPYNRSKLP RLRWTPDLHM 120 AFVHAVERLG GQERATPKLV LQMMNVRGLN IAHVKSHLQM YRSKKLDHES GHERAGISSV 180 FSPMDFHMRR GDRRFHDMFL QRAAGSALSS SLLQNVGFFG SRNAVSPEAS RIYGLLHRRQ 240 AATQTFDFKN YSSLRNQELA FNHHAASVTA GAITSDHGPA KGLIHNMIFR KDDKPTSHLF 300 DVRDAIAPNP PAVVTGAADR SSNWVGSSSR PLSRTMSASA STGFALGSHH LLSRWRGAGG 360 GNGYHLNGDV NTTSSDPVVT TDALGARLEK HLEPKAPNKV IDEMCTATGE KRTKILMEEN 420 SCTPDLQVGL SPDNNGAEAE KAKKRKVALS EQVVDNDKIP LLSLSLSLRS GEGSGGDAGS 480 RLEADSSSSN RKAALGLSTL DLTMSIKTLE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 4e-18 | 111 | 165 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-18 | 111 | 165 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-18 | 111 | 165 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-18 | 111 | 165 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812252.1 | 0.0 | uncharacterized protein LOC112889712 | ||||
TrEMBL | A0A2T7DXS0 | 0.0 | A0A2T7DXS0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Db01175.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2754 | 36 | 86 |