PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04105.1.g00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 218aa MW: 24877.9 Da PI: 10.0195 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 94.8 | 5.8e-30 | 36 | 137 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 f+k ltpsdv+k++rlv+pk++ae++ g + e++ l++ede g+ W+++++y+ +s++yvltkGW+++vk+++L+ Zmw_sc04105.1.g00020.1.es.mkhc 36 FEKPLTPSDVGKLNRLVIPKQHAERYfplsGDSGEKGLILSFEDEAGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKHLD 114 99***************************9666668889**************************************** PP TT-EEEEEE-SS..SEE..EEEE CS B3 76 egDfvvFkldgr..sefelvvkv 96 +gD+v F++++ + +l++++ Zmw_sc04105.1.g00020.1.es.mkhc 115 AGDVVHFERMRGlgIGDRLFIGF 137 ********775433334455555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.0E-41 | 30 | 149 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.49E-29 | 33 | 140 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.40E-29 | 35 | 126 | No hit | No description |
PROSITE profile | PS50863 | 13.69 | 36 | 140 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.6E-23 | 36 | 141 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-27 | 36 | 139 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MAMNHISQEH PQVWPWGVAM YTNLHYHHHY EKEHLFEKPL TPSDVGKLNR LVIPKQHAER 60 YFPLSGDSGE KGLILSFEDE AGKPWRFRYS YWTSSQSYVL TKGWSRYVKE KHLDAGDVVH 120 FERMRGLGIG DRLFIGFRRR GESATTRAVA PPLPAVRVAA AAQSAGEQQP WSPMCYSTSG 180 SYPNSPANSY AYRHSVDHDR SNTPHAGKRL RTRNGKAQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 1e-51 | 31 | 140 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 1e-51 | 31 | 140 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025827829.1 | 1e-130 | B3 domain-containing protein Os11g0156000-like isoform X1 | ||||
Swissprot | Q53QI0 | 3e-99 | Y1160_ORYSJ; B3 domain-containing protein Os11g0156000 | ||||
TrEMBL | A0A2T7CKD2 | 1e-129 | A0A2T7CKD2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Hb01814.1.p | 1e-127 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2446 | 38 | 89 |
Publications ? help Back to Top | |||
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