PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04103.1.g00100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 630aa MW: 69235.2 Da PI: 9.9669 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51 | 3.4e-16 | 316 | 363 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W++++ g+ R+ k+c++rw +yl Zmw_sc04103.1.g00100.1.am.mk 316 KGPWTPEEDVILVSYIQEHGPGNWRAVPVNTGLMRCSKSCRLRWTNYL 363 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.2 | 1.1e-14 | 369 | 414 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E+ ++v++ +lG++ W++Ia++++ Rt++++k++w+++l Zmw_sc04103.1.g00100.1.am.mk 369 RGNFTPHEEGIIVHLQSLLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 414 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-22 | 307 | 366 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.631 | 311 | 367 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.21E-29 | 313 | 410 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-13 | 315 | 365 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.9E-15 | 316 | 363 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.34E-11 | 318 | 363 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-23 | 367 | 419 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.74 | 368 | 418 | IPR017930 | Myb domain |
SMART | SM00717 | 5.4E-13 | 368 | 416 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-12 | 369 | 414 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.00E-8 | 371 | 412 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 630 aa Download sequence Send to blast |
MEKKKQGPGT GRCLSQSTVI TTTETEARKV SLGRMDAGSA VLLGVIIQSR PQEKGLENRR 60 QNGSRDSERE RGVRTSNPIA KWIGRGSRSP FCRSAAYGSA MKVKPRTGGG RGGEKWSLWR 120 SRNGPNGDPQ RQRPVQEQPN GSGDDDDEWT TWLPCRACMS MDGDLAGTTC SRRKQLAGTI 180 YPSSVLPAPS TCGCGPSRRI TGANIDQHAH MSDRIDRPYS QYVRNRVFME TWSARSPQAR 240 PGWIPLQSAG HGFGVATTMS CGALEQASGN RYPSQCRRFK EGTVDRRAGP WIYRSLEKKK 300 KKMGRPPCCD KVGIKKGPWT PEEDVILVSY IQEHGPGNWR AVPVNTGLMR CSKSCRLRWT 360 NYLRPGIRRG NFTPHEEGII VHLQSLLGNR WAAIASYLPQ RTDNDIKNYW NTHLKKKLKK 420 HQAIGAIFAP PPPPSDLSSM TIPAAAFTDA GHVDHHRMIT NPLSTYSYAP RPTRSNPGDV 480 TQLIARRSSF AAAPGSSLDA ESGTSSSSYA SSMDNISKLL DGFMKSATPQ NDVAAAQLNP 540 PAAEVNPLLP FESMSGAGRE VPPSFADVLP PQPVLMEPRS GHHDDQPKQQ QQQAQAPLSS 600 MEKWLLDEAA EQVGDLMDLS DPWCSVPMLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 8e-23 | 316 | 418 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 2e-22 | 316 | 418 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-22 | 316 | 418 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 1e-22 | 314 | 418 | 25 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 7e-23 | 316 | 418 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 7e-23 | 316 | 418 | 4 | 105 | C-Myb DNA-Binding Domain |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004977433.1 | 1e-129 | transcription factor MYB30 | ||||
Swissprot | B3VTV7 | 5e-90 | MYB60_VITVI; Transcription factor MYB60 | ||||
TrEMBL | A0A1E5VWG1 | 1e-138 | A0A1E5VWG1_9POAL; Myb-related protein 306 | ||||
STRING | Si010608m | 1e-128 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP229 | 38 | 296 |
Publications ? help Back to Top | |||
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