PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04103.1.g00100.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 630aa    MW: 69235.2 Da    PI: 9.9669
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04103.1.g00100.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.4e-16316363148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT+eEd +lv +++++G+g+W++++   g+ R+ k+c++rw +yl
  Zmw_sc04103.1.g00100.1.am.mk 316 KGPWTPEEDVILVSYIQEHGPGNWRAVPVNTGLMRCSKSCRLRWTNYL 363
                                   79********************************************97 PP

2Myb_DNA-binding46.21.1e-14369414148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg++T+ E+ ++v++  +lG++ W++Ia++++  Rt++++k++w+++l
  Zmw_sc04103.1.g00100.1.am.mk 369 RGNFTPHEEGIIVHLQSLLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 414
                                   89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-22307366IPR009057Homeodomain-like
PROSITE profilePS5129423.631311367IPR017930Myb domain
SuperFamilySSF466891.21E-29313410IPR009057Homeodomain-like
SMARTSM007175.2E-13315365IPR001005SANT/Myb domain
PfamPF002497.9E-15316363IPR001005SANT/Myb domain
CDDcd001677.34E-11318363No hitNo description
Gene3DG3DSA:1.10.10.601.8E-23367419IPR009057Homeodomain-like
PROSITE profilePS5129418.74368418IPR017930Myb domain
SMARTSM007175.4E-13368416IPR001005SANT/Myb domain
PfamPF002491.4E-12369414IPR001005SANT/Myb domain
CDDcd001672.00E-8371412No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MEKKKQGPGT GRCLSQSTVI TTTETEARKV SLGRMDAGSA VLLGVIIQSR PQEKGLENRR  60
QNGSRDSERE RGVRTSNPIA KWIGRGSRSP FCRSAAYGSA MKVKPRTGGG RGGEKWSLWR  120
SRNGPNGDPQ RQRPVQEQPN GSGDDDDEWT TWLPCRACMS MDGDLAGTTC SRRKQLAGTI  180
YPSSVLPAPS TCGCGPSRRI TGANIDQHAH MSDRIDRPYS QYVRNRVFME TWSARSPQAR  240
PGWIPLQSAG HGFGVATTMS CGALEQASGN RYPSQCRRFK EGTVDRRAGP WIYRSLEKKK  300
KKMGRPPCCD KVGIKKGPWT PEEDVILVSY IQEHGPGNWR AVPVNTGLMR CSKSCRLRWT  360
NYLRPGIRRG NFTPHEEGII VHLQSLLGNR WAAIASYLPQ RTDNDIKNYW NTHLKKKLKK  420
HQAIGAIFAP PPPPSDLSSM TIPAAAFTDA GHVDHHRMIT NPLSTYSYAP RPTRSNPGDV  480
TQLIARRSSF AAAPGSSLDA ESGTSSSSYA SSMDNISKLL DGFMKSATPQ NDVAAAQLNP  540
PAAEVNPLLP FESMSGAGRE VPPSFADVLP PQPVLMEPRS GHHDDQPKQQ QQQAQAPLSS  600
MEKWLLDEAA EQVGDLMDLS DPWCSVPMLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-233164184105MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-2231641858159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-2231641858159MYB PROTO-ONCOGENE PROTEIN
1h8a_C1e-2231441825128MYB TRANSFORMING PROTEIN
1mse_C7e-233164184105C-Myb DNA-Binding Domain
1msf_C7e-233164184105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977433.11e-129transcription factor MYB30
SwissprotB3VTV75e-90MYB60_VITVI; Transcription factor MYB60
TrEMBLA0A1E5VWG11e-138A0A1E5VWG1_9POAL; Myb-related protein 306
STRINGSi010608m1e-128(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]