PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04074.1.g00120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 377aa MW: 40230.3 Da PI: 8.2039 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.7 | 1e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl Zmw_sc04074.1.g00120.1.sm.mkhc 14 KGPWSPEEDAKLKAYIEEHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 35.2 | 2.9e-11 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+ E+ ++ + G++ W+ Ia+ ++ gRt++++k++w++ Zmw_sc04074.1.g00120.1.sm.mkhc 69 GDFTEKEEHIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.018 | 9 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.55E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-13 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.6E-16 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.92E-10 | 16 | 62 | No hit | No description |
SMART | SM00717 | 3.7E-9 | 67 | 115 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 16.103 | 67 | 117 | IPR017930 | Myb domain |
Pfam | PF00249 | 5.0E-10 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-22 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MGRAPCCDKA SVKKGPWSPE EDAKLKAYIE EHGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGD FTEKEEHIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGK 120 RAPSRRARAD ESPYLSTTAA GGNVCSTING NNNSASMASQ TLSASALERI QLHMRLQGLY 180 GAFGCAAGAG DSTTAPQWPK LETMLTSMLR IPATEPVDAV ATTVSVHHQP QHVVDQSLAA 240 GRAVETEQLG STRATGYNNM PCSFERPGKP GFCSPSATDA DASGLMVNGG YGGAGFGPHH 300 NDIYDLLYSK YGSMFGAGAQ GGGHIIPSLP ELQCPDGAAA IVGADEKFST WTNASCDYGQ 360 LQGNTIFGSL QDYALGG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-25 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792029.1 | 1e-163 | transcription factor CSA-like | ||||
Swissprot | Q9FKL2 | 6e-84 | MYB36_ARATH; Transcription factor MYB36 | ||||
TrEMBL | A0A2T7FD29 | 1e-162 | A0A2T7FD29_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ab03119.1.p | 1e-164 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Publications ? help Back to Top | |||
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