PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04072.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 402aa MW: 43093.7 Da PI: 10.4637

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04072.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	106.8	3.4e-33	256	330	8	80
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.sec.eaessss 80 ++++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++t+eWLl+qa+p+i ++tg+++s+a +c +a s ss Zmw_sc04072.1.g00030.1.am.mk 256 SKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTVEWLLRQAEPSILAATGSGTSPAvFSCsSAPSTSS 330 79********************************************************99999444432222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.5E-29	255	342	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.73	256	310	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
LRPSTATTAE AVGISSSHAQ RQTCCVSPGE RAASRQTFRW SSRALRASSV LRGSTHGYSC 60 ALLFHHSMPR YAINHRSALA PCSGFCSGSA ADAAYPFLDK SWGAGAVSRR VLREWFVVHE 120 YVRCRRQWSP ARGRRCGRGQ DDLEDGSADG GGAELEDGGV DEDETSSKTA VRTVVEPSSR 180 TGTCRSRALA RTARWRRDDV VAVAADASHT PRTKAMASRE HAAAIFHQVY RPTPAPAPAA 240 PAPMSLAALA XXXSGSKDRH SKVNGRGRRV RMPIVCAARV FQLTRELGLK SDGQTVEWLL 300 RQAEPSILAA TGSGTSPAVF SCSSAPSTSS SLRSLLLGKR PRQDVDEAPP PLWAAMQARP 360 VVVAWGLSTP AQEQAYASEA QGHRLNLLSV LSGTTKPAEE SR

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

LRPSTATTAE AVGISSSHAQ RQTCCVSPGE RAASRQTFRW SSRALRASSV LRGSTHGYSC  60
ALLFHHSMPR YAINHRSALA PCSGFCSGSA ADAAYPFLDK SWGAGAVSRR VLREWFVVHE  120
YVRCRRQWSP ARGRRCGRGQ DDLEDGSADG GGAELEDGGV DEDETSSKTA VRTVVEPSSR  180
TGTCRSRALA RTARWRRDDV VAVAADASHT PRTKAMASRE HAAAIFHQVY RPTPAPAPAA  240
PAPMSLAALA XXXSGSKDRH SKVNGRGRRV RMPIVCAARV FQLTRELGLK SDGQTVEWLL  300
RQAEPSILAA TGSGTSPAVF SCSSAPSTSS SLRSLLLGKR PRQDVDEAPP PLWAAMQARP  360
VVVAWGLSTP AQEQAYASEA QGHRLNLLSV LSGTTKPAEE SR

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100