PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04070.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 318aa    MW: 35171.2 Da    PI: 10.6749
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04070.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.19.5e-19145192148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT+eEd++l+ +++q+G g+W++ +++ g++R++k+c++rw +yl
  Zmw_sc04070.1.g00030.1.am.mk 145 KGPWTPEEDQKLLAYIEQHGHGCWRSLPAKAGLRRCGKSCRLRWTNYL 192
                                   79********************************************97 PP
2Myb_DNA-binding43.38.6e-14198289148
                                   TSSS-HHHHHHHHHHHHHTTTT.............................................-HHHHHHHHTTTS- CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.............................................tWktIartmgkgRt 36 
                                   rg++T +E++ +++++++lG+                                              +W++Ia +++ +Rt
  Zmw_sc04070.1.g00030.1.am.mk 198 RGKFTLQEEQTIIQLHALLGNSlavphhpcqgagplppptcrpaatltcsvpsllpladrpvlvsfpSWSAIATHLP-KRT 277
                                   89*******************9*******************************************************.*** PP

                                   HHHHHHHHHHHT CS
               Myb_DNA-binding  37 lkqcksrwqkyl 48 
                                   ++++k++w+++l
  Zmw_sc04070.1.g00030.1.am.mk 278 DNEIKNYWNTHL 289
                                   *********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-25137195IPR009057Homeodomain-like
PROSITE profilePS5129425.045140196IPR017930Myb domain
SMARTSM007171.6E-15144194IPR001005SANT/Myb domain
PfamPF002497.1E-17145192IPR001005SANT/Myb domain
SuperFamilySSF466895.19E-23146219IPR009057Homeodomain-like
CDDcd001679.65E-13147192No hitNo description
PROSITE profilePS500908.258193289IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.7E-22196218IPR009057Homeodomain-like
SMARTSM007171.3E-11197291IPR001005SANT/Myb domain
PfamPF002492.1E-11198289IPR001005SANT/Myb domain
SuperFamilySSF466897.18E-8264298IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-22265293IPR009057Homeodomain-like
CDDcd001671.29E-6266289No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MVARCAPAGY VANPGTADQR VEAHEYARGE YDGCDHESRR AARTGRAPNA VSIGRLRWEV  60
RYAVLRLSRR GRRVPRVPAS RMSAGAADWW AKPRVSQGRG RTETQEDSRP TLGRHYPSNL  120
TPRSPAGCYR MGRSPCCEKE AGLKKGPWTP EEDQKLLAYI EQHGHGCWRS LPAKAGLRRC  180
GKSCRLRWTN YLRPDIKRGK FTLQEEQTII QLHALLGNSL AVPHHPCQGA GPLPPPTCRP  240
AATLTCSVPS LLPLADRPVL VSFPSWSAIA THLPKRTDNE IKNYWNTHLK KRLAKMGIDP  300
ATHKPLPDAP AGASSGAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-181432935108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572652.14e-84transcription factor MYB106
SwissprotQ9LXF12e-74MYB16_ARATH; Transcription factor MYB16
TrEMBLI1IAW98e-83I1IAW9_BRADI; Uncharacterized protein
STRINGPavir.Ab02021.1.p4e-84(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  4. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]