PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04070.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MIKC_MADS
Protein Properties Length: 160aa    MW: 17940.4 Da    PI: 9.7377
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04070.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.12.3e-281059251
                                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                    ri+n++ rqvtfskRrngi+KKA+EL +LCdaev ++ifsstg+lyeyss
  Zmw_sc04070.1.g00010.1.sm.mkhc 10 RIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSS 59
                                    8***********************************************96 PP
2K-box64.83.2e-22871551988
                           K-box  19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                                     +  +kL+  + +L +e   l+GedL+ L+ keLq+Le+qLe+sl+ +RskK++ll+++i+el +k  +++
  Zmw_sc04070.1.g00010.1.sm.mkhc  87 KGGSKLETTTAQLTKE-SPLMGEDLSGLNAKELQSLENQLETSLRGVRSKKDQLLFDEIHELNRKVPQHS 155
                                     5557999999***999.9**********************************************987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.992161IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-38160IPR002100Transcription factor, MADS-box
CDDcd002654.49E-43277No hitNo description
SuperFamilySSF554559.68E-32279IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-27323IPR002100Transcription factor, MADS-box
PfamPF003194.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.38775160IPR002487Transcription factor, K-box
PfamPF014861.3E-1698153IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MGRGKTVIRR IDNSTSRQVT FSKRRNGIFK KAKELAILCD AEVGLMIFSS TGRLYEYSST  60
SMKSVIDRYG KAKEEQQVAA DPNSELKGGS KLETTTAQLT KESPLMGEDL SGLNAKELQS  120
LENQLETSLR GVRSKKDQLL FDEIHELNRK VPQHSDITFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-20177177MEF2C
5f28_B4e-20177177MEF2C
5f28_C4e-20177177MEF2C
5f28_D4e-20177177MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798442.18e-83MADS-box transcription factor 27 isoform X1
RefseqXP_025798450.17e-83MADS-box transcription factor 27 isoform X2
SwissprotQ6EP492e-79MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A0D9YU321e-89A0A0D9YU32_9ORYZ; Uncharacterized protein
STRINGOGLUM02G22050.12e-90(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]