PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04059.1.g00070.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MIKC_MADS

Protein Properties

Length: 563aa MW: 62078.7 Da PI: 9.2565

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04059.1.g00070.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	54.9	1.1e-17	337	374	1	38
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevavi 38 k+ien s rqvtfskRr g+lKKA+EL +LCda++ i Zmw_sc04059.1.g00070.1.am.mkhc 337 KKIENPSSRQVTFSKRRMGLLKKANELAILCDAQIGKI 374 68********************************9655 PP
2	K-box	54.7	4.4e-19	366	447	9	90
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 l++a+ + +e++++k+e + L+ R+++G+dL Lsl++ +LeqqLe sl k+R +K+ell +q+ e++++e ++ Zmw_sc04059.1.g00070.1.am.mkhc 366 LCDAQIGKIIREMTRMKDERNRLRIIMRQYMGDDLALLSLQDVTNLEQQLEFSLYKVRLRKQELLDQQLLEMRHREMRV 444 77888889999*****************************************************************999 PP K-box 88 qee 90 +e+ Zmw_sc04059.1.g00070.1.am.mkhc 445 SED 447 875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd05369	6.54E-118	48	301	No hit	No description
Gene3D	G3DSA:3.40.50.720	2.3E-73	48	302	IPR016040	NAD(P)-binding domain
SuperFamily	SSF51735	1.23E-68	51	301	IPR016040	NAD(P)-binding domain
PRINTS	PR00081	1.8E-24	52	69	IPR002347	Short-chain dehydrogenase/reductase SDR
Pfam	PF13561	2.6E-48	60	299	No hit	No description
PRINTS	PR00080	1.9E-7	126	137	IPR002347	Short-chain dehydrogenase/reductase SDR
PRINTS	PR00081	1.8E-24	126	137	IPR002347	Short-chain dehydrogenase/reductase SDR
PRINTS	PR00081	1.8E-24	180	196	IPR002347	Short-chain dehydrogenase/reductase SDR
PRINTS	PR00080	1.9E-7	186	194	IPR002347	Short-chain dehydrogenase/reductase SDR
PRINTS	PR00080	1.9E-7	206	225	IPR002347	Short-chain dehydrogenase/reductase SDR
PRINTS	PR00081	1.8E-24	206	225	IPR002347	Short-chain dehydrogenase/reductase SDR
PRINTS	PR00081	1.8E-24	228	245	IPR002347	Short-chain dehydrogenase/reductase SDR
PRINTS	PR00081	1.8E-24	263	283	IPR002347	Short-chain dehydrogenase/reductase SDR
SuperFamily	SSF55455	4.58E-19	329	378	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	24.278	329	375	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.0E-22	329	388	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.9E-17	331	351	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.9E-17	338	375	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.9E-17	351	366	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.9E-17	366	387	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS51297	11.041	371	454	IPR002487	Transcription factor, K-box
Pfam	PF01486	1.1E-14	374	446	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005774	Cellular Component	vacuolar membrane
GO:0005777	Cellular Component	peroxisome
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence Send to blast
FPTPNETVPA SACSFLRSSI APLRLPASRA RREPTARSME SPFRPDVLSR KAALVTGGGS 60 GICFEIAAQL ARHGAQVAIM GRRREVLDKA VDALRSQGFQ AVGFDGDVRK QEDAARVLAA 120 TVQHFGKLDI LVNGAAGNFL ASPEDLTPKG FRTVLEIDTV GTYTMCYEAL KYLKKGGPGK 180 GPSDGGLIIN ISATLHYTAS WYQIHVSAAK AGVDSITRSL ALEWGTDYDI RVNGIAPGPI 240 QGTPGLRKLA PEEMGKGSRE LMPLFKFGEK WDIAMAALYL ASDAGKYVNG TTMIVDGGLW 300 LSHPRHVPKE EVKALSRVVE KKEHLAGLMG RGKVELKKIE NPSSRQVTFS KRRMGLLKKA 360 NELAILCDAQ IGKIIREMTR MKDERNRLRI IMRQYMGDDL ALLSLQDVTN LEQQLEFSLY 420 KVRLRKQELL DQQLLEMRHR EMRVSEDLCL MVRRTAPAFF SSGRLILCVL VSGSCPDELA 480 LCTVPLGQQT QSADEMVANP TNKPFPWWDD AGSSQQLYGH HDAEPSTMTA LQLLPQLGEY 540 NKLQPLQPNL QDAAGLQSFI LRL

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence Send to blast

FPTPNETVPA SACSFLRSSI APLRLPASRA RREPTARSME SPFRPDVLSR KAALVTGGGS  60
GICFEIAAQL ARHGAQVAIM GRRREVLDKA VDALRSQGFQ AVGFDGDVRK QEDAARVLAA  120
TVQHFGKLDI LVNGAAGNFL ASPEDLTPKG FRTVLEIDTV GTYTMCYEAL KYLKKGGPGK  180
GPSDGGLIIN ISATLHYTAS WYQIHVSAAK AGVDSITRSL ALEWGTDYDI RVNGIAPGPI  240
QGTPGLRKLA PEEMGKGSRE LMPLFKFGEK WDIAMAALYL ASDAGKYVNG TTMIVDGGLW  300
LSHPRHVPKE EVKALSRVVE KKEHLAGLMG RGKVELKKIE NPSSRQVTFS KRRMGLLKKA  360
NELAILCDAQ IGKIIREMTR MKDERNRLRI IMRQYMGDDL ALLSLQDVTN LEQQLEFSLY  420
KVRLRKQELL DQQLLEMRHR EMRVSEDLCL MVRRTAPAFF SSGRLILCVL VSGSCPDELA  480
LCTVPLGQQT QSADEMVANP TNKPFPWWDD AGSSQQLYGH HDAEPSTMTA LQLLPQLGEY  540
NKLQPLQPNL QDAAGLQSFI LRL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4fc6_A	4e-53	43	304	20	275	Peroxisomal 2,4-dienoyl-CoA reductase
4fc6_B	4e-53	43	304	20	275	Peroxisomal 2,4-dienoyl-CoA reductase
4fc6_C	4e-53	43	304	20	275	Peroxisomal 2,4-dienoyl-CoA reductase
4fc6_D	4e-53	43	304	20	275	Peroxisomal 2,4-dienoyl-CoA reductase
4fc7_A	4e-53	43	304	20	275	Peroxisomal 2,4-dienoyl-CoA reductase
4fc7_B	4e-53	43	304	20	275	Peroxisomal 2,4-dienoyl-CoA reductase
4fc7_C	4e-53	43	304	20	275	Peroxisomal 2,4-dienoyl-CoA reductase
4fc7_D	4e-53	43	304	20	275	Peroxisomal 2,4-dienoyl-CoA reductase
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Functional Description ? help Back to Top
Source	Description
UniProt	Auxiliary enzyme of beta-oxidation. Participates in the degradation of unsaturated fatty enoyl-CoA esters having double bonds in both even- and odd-numbered positions in peroxisome. Catalyzes the NADP-dependent reduction of 2,4-dienoyl-CoA to yield trans-3-enoyl-CoA (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976797.1	0.0	peroxisomal 2,4-dienoyl-CoA reductase
Swissprot	Q9LTV6	1e-139	DECR2_ARATH; Peroxisomal 2,4-dienoyl-CoA reductase
TrEMBL	A0A3L6PYE3	0.0	A0A3L6PYE3_PANMI; Peroxisomal 2,4-dienoyl-CoA reductase-like
STRING	Sb06g028410.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4989	2	2

Publications ? help Back to Top
Reumann S,Ma C,Lemke S,Babujee L AraPerox. A database of putative Arabidopsis proteins from plant peroxisomes. Plant Physiol., 2004. 136(1): p. 2587-608 [PMID:15333753] Reumann S, et al. Proteome analysis of Arabidopsis leaf peroxisomes reveals novel targeting peptides, metabolic pathways, and defense mechanisms. Plant Cell, 2007. 19(10): p. 3170-93 [PMID:17951448] Wiszniewski AA,Zhou W,Smith SM,Bussell JD Identification of two Arabidopsis genes encoding a peroxisomal oxidoreductase-like protein and an acyl-CoA synthetase-like protein that are required for responses to pro-auxins. Plant Mol. Biol., 2009. 69(5): p. 503-15 [PMID:19043666]