PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04050.1.g00110.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 151aa MW: 17161.3 Da PI: 9.5031

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04050.1.g00110.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.3	4.2e-09	14	57	3	44
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT+ +l+ +a + + ++ +W+ Iar +g g+++++++ ++ Zmw_sc04050.1.g00110.1.am.mk 14 QWTPKQNKLFEQALAVYDKDtpdRWTNIARAVG-GKSAEEVRRYY 57 7******************************.*******99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	10.592	10	65	IPR017884	SANT domain
SMART	SM00717	3.7E-8	11	63	IPR001005	SANT/Myb domain
Pfam	PF00249	3.0E-7	13	57	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.13E-12	14	69	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.2E-6	14	67	IPR009057	Homeodomain-like
CDD	cd00167	1.81E-7	15	60	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MASLSMTKPS ARAQWTPKQN KLFEQALAVY DKDTPDRWTN IARAVGGKSA EEVRRYYELL 60 EEDVKHIESG KVPFPEYRGN AGAATGYEAD RYEYLILYAP FEVEAFEDLT RRKEAVREDA 120 TLRARATMAS PKRPKRLESQ SSPARASALR T

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	2e-30	4	82	1	78	RADIALIS
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961116.1	4e-51	protein RADIALIS-like 3
TrEMBL	A0A3L6T7C1	7e-50	A0A3L6T7C1_PANMI; Protein RADIALIS-like 3
STRING	Si023770m	2e-50	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP270	38	230