PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04050.1.g00070.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GATA

Protein Properties

Length: 487aa MW: 52493.1 Da PI: 11.3077

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04050.1.g00070.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	62.8	4e-20	360	394	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCgt++TplWR+gp+g+k+LCnaCG++++k+++ Zmw_sc04050.1.g00070.1.am.mk 360 CANCGTSSTPLWRNGPRGPKSLCNACGIRFKKEER 394 ********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	1.1E-19	354	406	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	14.259	354	411	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	2.14E-13	356	394	No hit	No description
Gene3D	G3DSA:3.30.50.10	3.4E-17	358	394	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	3.29E-13	359	391	No hit	No description
Pfam	PF00320	7.9E-18	360	394	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	360	385	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence Send to blast
MGRRRPSGHR PARARGLDTY AAATYAPVTV SEPPHGRAFL QRTRRRGSGR SGSAAASSTL 60 LTRRPMRPDR GYEFRWQGNN ASIHCTAPRD PRGRRRWRRR ARRCAYARAR PLARPRGRLF 120 HGSHAFDRAG PCPCAPARES FDAPRLSTMI EGRTRRLSCK PCFAWREASA ARSLPWRQLF 180 RSISGPVVTK GPEQSLVTAT PTRVRAMAAA AIGPVSSDQS VRRVEPALRC DTTMLDRYHN 240 QSSSMVASTT FSLFFPPLPK VGQWPDEDDH SSITTSPSSP SSSSTGSVDC TLSLGTPSSR 300 RASAAAEPMT KHVALPPPAH PSYVAWDDVV GGHQSSDYCR KPAGGAAKAG AHDAFADRRC 360 ANCGTSSTPL WRNGPRGPKS LCNACGIRFK KEERRAAATA AMETGAGASA RCGYSAQRAQ 420 YEYAAAVARA SPCEGSFPCG GGVDADANAS ANTNAPFLPW RLNVVAPAPA PAFAAVWPER 480 TSLFQYN

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence Send to blast

MGRRRPSGHR PARARGLDTY AAATYAPVTV SEPPHGRAFL QRTRRRGSGR SGSAAASSTL  60
LTRRPMRPDR GYEFRWQGNN ASIHCTAPRD PRGRRRWRRR ARRCAYARAR PLARPRGRLF  120
HGSHAFDRAG PCPCAPARES FDAPRLSTMI EGRTRRLSCK PCFAWREASA ARSLPWRQLF  180
RSISGPVVTK GPEQSLVTAT PTRVRAMAAA AIGPVSSDQS VRRVEPALRC DTTMLDRYHN  240
QSSSMVASTT FSLFFPPLPK VGQWPDEDDH SSITTSPSSP SSSSTGSVDC TLSLGTPSSR  300
RASAAAEPMT KHVALPPPAH PSYVAWDDVV GGHQSSDYCR KPAGGAAKAG AHDAFADRRC  360
ANCGTSSTPL WRNGPRGPKS LCNACGIRFK KEERRAAATA AMETGAGASA RCGYSAQRAQ  420
YEYAAAVARA SPCEGSFPCG GGVDADANAS ANTNAPFLPW RLNVVAPAPA PAFAAVWPER  480
TSLFQYN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	101	RGRRRWRRRAR
2	94	102	RRWRRRARR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates organogenesis during transition from the vegetative to the reproductive phase. Regulates the expression of CYP78A11/PLA1, HD3A and MADS1 during reproductive development in rice. May act upstream of CYP78A11/PLA1 during panicle development. Acts independently of the photoperiodic and gibberellin signaling pathways. {ECO:0000269\|PubMed:19337211}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004963570.1	9e-56	GATA transcription factor 15
Swissprot	Q6L5E5	2e-41	GAT15_ORYSJ; GATA transcription factor 15
TrEMBL	A0A3L6R8D0	3e-57	A0A3L6R8D0_PANMI; GATA transcription factor 19-like
STRING	Pavir.Ca00998.1.p	4e-55	(Panicum virgatum)
STRING	Si022366m	8e-55	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1665	37	102

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349]