PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04032.1.g00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 272aa MW: 28118.7 Da PI: 9.8822 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.4 | 6.8e-10 | 189 | 230 | 9 | 55 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + RR+ri +++ +L+el+P+ +K++ +++LekAv Y+k Lq Zmw_sc04032.1.g00020.1.am.mk 189 AKTRRERISERLKTLQELVPNG-----TKVDLVTMLEKAVSYVKFLQ 230 589*****************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.919 | 180 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.3E-12 | 182 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.18E-12 | 182 | 234 | No hit | No description |
SuperFamily | SSF47459 | 3.53E-13 | 183 | 241 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.8E-12 | 186 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.8E-7 | 189 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MALVREHTAY GGFDGAEASA FDALLGAEAA ALFGGFTSPE PATSYSGGNV WAGAGTASVL 60 AFGRAVPAVS GEKVFDAWID GVDQSYRAAS PASVSYDATT GCFTLTERAA SSGGAGRTFG 120 LLFPSTSSGS GGSPDRAAPA RASQKRPYLV KGAEPQAVSS KKQCGAGRKT GKAKPAPAVP 180 TKNPQSLAAK TRRERISERL KTLQELVPNG TKVDLVTMLE KAVSYVKFLQ LQVKVLATDE 240 FWPAQGGKAP EISQVREALD AILSSSQKGQ LS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953650.1 | 1e-123 | putative transcription factor bHLH086 | ||||
Swissprot | Q9C707 | 5e-54 | BH083_ARATH; Transcription factor bHLH83 | ||||
TrEMBL | A0A368PQF1 | 1e-122 | A0A368PQF1_SETIT; Uncharacterized protein | ||||
STRING | Sb04g030230.1 | 1e-112 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1412 | 38 | 117 |