PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04026.1.g00060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | LFY | ||||||||
Protein Properties | Length: 470aa MW: 51326.2 Da PI: 9.3008 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 270.9 | 4.6e-83 | 56 | 329 | 1 | 280 |
FLO_LFY 1 mdpea.fsas.lfkwd...praaaaapparlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvs 76 mdp++ fsa+ f+wd p++aa +pp ++++l a a++ releel+ +yGvr +tva+i elGft+s Zmw_sc04026.1.g00060.1.am.mk 56 MDPHDaFSAAhPFRWDlgpPAHAAPHPPPPP----PPPPPSLPFPLAPPANAPRELEELVAGYGVRPSTVARILELGFTAS 132 676554876659****653322222222222....222233345567778889**************************** PP FLO_LFY 77 tLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqee 157 tL++m+++eldd+m++l+ +fr+d+l+Ger+G++aa+raer r+ + r ++ +lda+sqe+ls+e++ Zmw_sc04026.1.g00060.1.am.mk 133 TLLGMTERELDDMMAALAGLFRWDVLLGERFGLRAALRAERARVVALG---GRF-----QTGGTLDAASQEVLSDERDVA- 204 ********************************************9955...444.....46779***********98855. PP FLO_LFY 158 keaagsggeglgeaelvaaeekkseeekkkaskk.kqkrkkkkelkse.....ededeeeeededeegsgedgeerqrehP 232 +sgg e++ a+ +k+ +++ ++k k++rkk+ + e +++ ++++e+s+ +g erqrehP Zmw_sc04026.1.g00060.1.am.mk 205 ----ASGGVADDETGRRLAAGRKQAKKEAATRKGkKARRKKELRPLDVledenEGDEDGGGASDSTESSAGGGGERQREHP 281 ....4444443333333333322222222222221222222222222232222112222223334444667788******* PP FLO_LFY 233 fivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtk 280 f+vtepgevar+kknGLDYLf+LyeqCr fLlqvq+iak G+k+Ptk Zmw_sc04026.1.g00060.1.am.mk 282 FVVTEPGEVARAKKNGLDYLFHLYEQCRVFLLQVQTIAKMGGHKSPTK 329 ***********************************************9 PP | |||||||
2 | FLO_LFY | 235.7 | 2.3e-72 | 354 | 460 | 280 | 386 |
FLO_LFY 280 kvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfn 360 vtnqvfryakk+gasyinkPkmrhYvhCYalhcLdeeasnalrra+k+rgenvGawrqacy+plv+iaar+g+didavf+ Zmw_sc04026.1.g00060.1.am.mk 354 HVTNQVFRYAKKCGASYINKPKMRHYVHCYALHCLDEEASNALRRAYKARGENVGAWRQACYAPLVEIAARHGFDIDAVFA 434 6******************************************************************************** PP FLO_LFY 361 ahprLsiWYvPtkLrqLChlerskas 386 ahprLsiWYvPt+LrqLCh++r+ ++ Zmw_sc04026.1.g00060.1.am.mk 435 AHPRLSIWYVPTRLRQLCHQARNGHA 460 **********************9775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 7.9E-183 | 56 | 460 | IPR002910 | Floricaula/leafy protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0031490 | Molecular Function | chromatin DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence Send to blast |
MRGTLARASS HTGTVRPSET NERGFVKSTG CARPAVRRTQ QWPLYNEPSP PAKATMDPHD 60 AFSAAHPFRW DLGPPAHAAP HPPPPPPPPP PSLPFPLAPP ANAPRELEEL VAGYGVRPST 120 VARILELGFT ASTLLGMTER ELDDMMAALA GLFRWDVLLG ERFGLRAALR AERARVVALG 180 GRFQTGGTLD AASQEVLSDE RDVAASGGVA DDETGRRLAA GRKQAKKEAA TRKGKKARRK 240 KELRPLDVLE DENEGDEDGG GASDSTESSA GGGGERQREH PFVVTEPGEV ARAKKNGLDY 300 LFHLYEQCRV FLLQVQTIAK MGGHKSPTKR QIGMHDMDAL SDSVVLCATP TYPHVTNQVF 360 RYAKKCGASY INKPKMRHYV HCYALHCLDE EASNALRRAY KARGENVGAW RQACYAPLVE 420 IAARHGFDID AVFAAHPRLS IWYVPTRLRQ LCHQARNGHA TAGLPPPPMF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2vy1_A | 6e-95 | 273 | 457 | 2 | 161 | PROTEIN LEAFY |
2vy2_A | 6e-95 | 273 | 457 | 2 | 161 | PROTEIN LEAFY |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Together with APO1, involved in the temporal regulation of meristem size and identity during both vegetative and reproductive developments through interaction with APO1 (PubMed:21910771). Promotes flowering (PubMed:21910771). {ECO:0000250|UniProtKB:Q00958, ECO:0000269|PubMed:21910771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00095 | SELEX | Transfer from AT5G61850 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004976675.1 | 0.0 | probable transcription factor FL | ||||
Swissprot | Q0JAI1 | 0.0 | FL_ORYSJ; Probable transcription factor FL | ||||
TrEMBL | K3YC12 | 0.0 | K3YC12_SETIT; Uncharacterized protein | ||||
STRING | Si011756m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8269 | 36 | 49 |