PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc04017.1.g00090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 139aa MW: 15264.5 Da PI: 10.4775 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 62.5 | 8.1e-20 | 93 | 139 | 2 | 48 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkS 48 r+rWtpeLHe+Fveav+ LGGsekAtPk+ ++mkvk+ + v+S Zmw_sc04017.1.g00090.1.sm.mk 93 LRMRWTPELHEQFVEAVNLLGGSEKATPKAAQKVMKVKDPKKAAVAS 139 69***********************************9877777766 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.55E-8 | 89 | 132 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.0E-15 | 91 | 139 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.9E-13 | 92 | 131 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 139 aa Download sequence Send to blast |
MVWAPRGGGL VRGFVDLLGL AGGRTSSAAS ATWRCGEVKN ARRWPWALFF EEDVDARSLT 60 PKNHLLRSSL PPFNYDEIST DNLPSSSTTP TKLRMRWTPE LHEQFVEAVN LLGGSEKATP 120 KAAQKVMKVK DPKKAAVAS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-14 | 92 | 130 | 2 | 40 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-14 | 92 | 130 | 2 | 40 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 3e-14 | 92 | 130 | 1 | 39 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-14 | 92 | 130 | 1 | 39 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-14 | 92 | 130 | 1 | 39 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-14 | 92 | 130 | 1 | 39 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-14 | 92 | 130 | 2 | 40 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-14 | 92 | 130 | 2 | 40 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-14 | 92 | 130 | 2 | 40 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-14 | 92 | 130 | 2 | 40 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-14 | 92 | 130 | 2 | 40 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-14 | 92 | 130 | 2 | 40 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002454768.2 | 2e-24 | protein PHOSPHATE STARVATION RESPONSE 2 isoform X2 | ||||
Refseq | XP_021315087.1 | 2e-24 | protein PHOSPHATE STARVATION RESPONSE 2 isoform X1 | ||||
Refseq | XP_021315088.1 | 2e-24 | protein PHOSPHATE STARVATION RESPONSE 2 isoform X3 | ||||
TrEMBL | A0A0A9MIF3 | 3e-29 | A0A0A9MIF3_ARUDO; Uncharacterized protein | ||||
STRING | Sb04g036955.1 | 6e-24 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP28462 | 3 | 5 |