PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04014.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ZF-HD | ||||||||
Protein Properties | Length: 86aa MW: 9066.07 Da PI: 7.6482 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 78.1 | 1.2e-24 | 1 | 48 | 10 | 58 |
ZF-HD_dimer 10 lkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++NhAa++GghavDGC+Ef+p+ geegt al+CaACgCHR+FHRr v+ Zmw_sc04014.1.g00010.1.am.mk 1 QRNHAARMGGHAVDGCREFLPA-GEEGTGGALRCAACGCHRSFHRRVVQ 48 69*******************9.999********************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-13 | 1 | 43 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.2E-24 | 1 | 47 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 22.99 | 1 | 46 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 8.6E-22 | 1 | 45 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 86 aa Download sequence Send to blast |
QRNHAARMGG HAVDGCREFL PAGEEGTGGA LRCAACGCHR SFHRRVVQRC CCCFCRDDTD 60 AVAHAPAAPG RWDCSPESTA SSTTAS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Inhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001151712.2 | 1e-26 | mini zinc finger 3 | ||||
Swissprot | Q0J5F8 | 3e-26 | MIF4_ORYSJ; Mini zinc finger protein 4 | ||||
TrEMBL | B6U404 | 5e-27 | B6U404_MAIZE; Mini zinc finger 3 | ||||
STRING | OGLUM08G16680.1 | 1e-24 | (Oryza glumipatula) | ||||
STRING | OS08T0438100-01 | 7e-25 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1431 | 34 | 120 |
Publications ? help Back to Top | |||
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