PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04002.1.g00050.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 243aa    MW: 26339.4 Da    PI: 10.4187
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04002.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.6e-201666256
                           AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                                  ++ GVr+++ +grWvAeI+d      +r r +lg+f+taeeAa+a+++a+++l+ge
  Zmw_sc04002.1.g00050.1.am.mk 16 RFVGVRQRP-SGRWVAEIKD----SaQRVRLWLGTFDTAEEAARAYDEAARALRGE 66
                                  589******.7*********....4456**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-141666IPR001471AP2/ERF domain
CDDcd000181.03E-281674No hitNo description
PROSITE profilePS5103220.5081673IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-281674IPR001471AP2/ERF domain
SMARTSM003804.8E-331679IPR001471AP2/ERF domain
PRINTSPR003673.4E-81728IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-201774IPR016177DNA-binding domain
PRINTSPR003673.4E-83955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MAAQESGRTA ASRARRFVGV RQRPSGRWVA EIKDSAQRVR LWLGTFDTAE EAARAYDEAA  60
RALRGENTRT NFADRGRHGG XXXXXXXXXX XXXXXXXXXX GSAASRARLS KNLQHVIARA  120
AAAGRATACA GVGDQFALAA VFRHSWLQPN NTPHTPQQQQ QCDAETAPHV KSAVQPSFVV  180
PRRTEAPQPP SQTAAVPVGD IVDGDVSVEM GVQERSFKVS SSVIAPPTFS ASSPEPFVLE  240
DFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-15572371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239429.14e-70dehydration-responsive element-binding protein 1C
TrEMBLA0A3B6LP971e-69A0A3B6LP97_WHEAT; Uncharacterized protein
TrEMBLA0A446UGS51e-69A0A446UGS5_TRITD; Uncharacterized protein
STRINGGRMZM2G018138_P013e-65(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124292634