PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc03999.1.g00060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | G2-like | ||||||||
Protein Properties | Length: 563aa MW: 58898 Da PI: 8.4355 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 90.4 | 1.6e-28 | 286 | 335 | 2 | 51 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ Zmw_sc03999.1.g00060.1.am.mk 286 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 335 9************************************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.4E-13 | 283 | 336 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.0E-25 | 284 | 335 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.9E-21 | 286 | 336 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 563 aa Download sequence Send to blast |
MTAARTWTLP VAMGCHCCCR ERNERQGCAR AIGARWDMEA SSAASPDLSL HISLPNSSAP 60 GSGPAGGRAA AGGAGGGGVG GDPWRRLNWS TELSLSPPAE PDADALPLRH RPSAAASSSA 120 ATTSSVRMMP MPTLQPLDAG GGGGGGGASA APPIRGIPIY NGPGGFPFLP PAAGGDQQKV 180 GFYGSYHHPA TWPSSLGSTS LSPLAPGASP LDPASAFLSP AAHHHHRMLS ASGRLNGMLT 240 DTLRGYGSAG GLGGIGGHHH LHGAQLFGLG SRFMPKLPAK RSMRAPRMRW TSTLHARFVH 300 AVELLGGHER ATPKSVLELM DVKDLTLAHV KSHLQVRDCR PPLPLNSPKT RAFCFVYLLP 360 FLLLFGSDKN TNAVTPELVN DGETDDGWRL AAKKLPFLGG RERGERKMYR TVKSTDKPAA 420 SSGPADGGSG DDEFSGAGQT ASGGDNNMCA RPFGEHRSTS EGAASSVGRG GDMDQSTAGN 480 TSTRWSNSSR DPWMSLNSCN MDAHRLVDLS SPIENAEPCR SSSSQVSNQE PSSPSLEFTL 540 GRPDWQGPPI MNEPAIEELK LKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 3e-14 | 287 | 335 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-14 | 287 | 335 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-14 | 287 | 335 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-14 | 287 | 335 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804688.1 | 1e-139 | probable transcription factor RL9 | ||||
Swissprot | Q0J235 | 7e-75 | ROLL9_ORYSJ; Probable transcription factor RL9 | ||||
TrEMBL | A0A3L6DY09 | 1e-167 | A0A3L6DY09_MAIZE; Putative transcription factor RL9 | ||||
STRING | GRMZM2G082264_P01 | 1e-113 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2558 | 37 | 87 |