PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03991.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YB

Protein Properties

Length: 355aa MW: 37980.9 Da PI: 9.3616

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03991.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	182.9	2.6e-57	170	265	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep 82 reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfedy+ep Zmw_sc03991.1.g00060.1.am.mk 170 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYIEP 250 89***************************************************************************** PP NF-YB 83 lkvylkkyrelegek 97 lk+yl+k+relegek Zmw_sc03991.1.g00060.1.am.mk 251 LKLYLHKFRELEGEK 265 **********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	7.4E-54	167	277	IPR009072	Histone-fold
SuperFamily	SSF47113	6.83E-40	172	269	IPR009072	Histone-fold
Pfam	PF00808	1.6E-27	175	239	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	4.0E-20	203	221	No hit	No description
PROSITE pattern	PS00685	0	206	222	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	4.0E-20	222	240	No hit	No description
PRINTS	PR00615	4.0E-20	241	259	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MAKGACVPWS QRESTSTYLD HPRGSRVPWP TQTADTPPAW QKRTASASAG WPRTYRQTNG 60 PPLATSPARC VLIPTIHPTE GRCQSLHSPL KPLSALVALL PPPFQIFARP RRPSCSGEFQ 120 PSCLAPLIRR AARKERGEQG EPALFLGPAA MPDSDNESGG PSNAEFSSPR EQDRFLPIAN 180 VSRIMKKALP ANAKISKDAK ETVQECVSEF ISFITGEASD KCQREKRKTI NGDDLLWAMT 240 TLGFEDYIEP LKLYLHKFRE LEGEKVATGA SGSGQQQKDA PSSAHNNAAG YGVYGGAGAG 300 GSGSGMVMMM GQPMYGSPPA GYPQPPHHQM VMGGAKGAYG HGGASPSGLG RQDRV

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MAKGACVPWS QRESTSTYLD HPRGSRVPWP TQTADTPPAW QKRTASASAG WPRTYRQTNG  60
PPLATSPARC VLIPTIHPTE GRCQSLHSPL KPLSALVALL PPPFQIFARP RRPSCSGEFQ  120
PSCLAPLIRR AARKERGEQG EPALFLGPAA MPDSDNESGG PSNAEFSSPR EQDRFLPIAN  180
VSRIMKKALP ANAKISKDAK ETVQECVSEF ISFITGEASD KCQREKRKTI NGDDLLWAMT  240
TLGFEDYIEP LKLYLHKFRE LEGEKVATGA SGSGQQQKDA PSSAHNNAAG YGVYGGAGAG  300
GSGSGMVMMM GQPMYGSPPA GYPQPPHHQM VMGGAKGAYG HGGASPSGLG RQDRV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	1e-47	170	260	7	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002463163.1	3e-92	nuclear transcription factor Y subunit B-10
Swissprot	Q69J40	3e-75	NFYBA_ORYSJ; Nuclear transcription factor Y subunit B-10
TrEMBL	A0A3L6QSG3	2e-95	A0A3L6QSG3_PANMI; Nuclear transcription factor Y subunit B-3-like
STRING	Sb02g038870.1	1e-91	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP201	38	331

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]