PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc03984.1.g00050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 329aa MW: 35957.4 Da PI: 6.3772 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 29.4 | 2.2e-09 | 16 | 41 | 1 | 26 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegk 26 lppGfrFhPtdee+v++yL++k+ ++ Zmw_sc03984.1.g00050.1.sm.mkhc 16 LPPGFRFHPTDEEIVTHYLTPKALDR 41 79*******************98776 PP | |||||||
2 | NAM | 91 | 2.1e-28 | 50 | 115 | 64 | 129 |
NAM 64 rdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +d+ky+tg+r+nrat+sgyWkatgkdke+++ +g lvg+kktLvfy+grap+gekt+Wvmhe+rle Zmw_sc03984.1.g00050.1.sm.mkhc 50 EDRKYPTGTRTNRATESGYWKATGKDKEIFRGRGVLVGMKKTLVFYRGRAPRGEKTEWVMHEFRLE 115 689************************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 32.398 | 1 | 138 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.7E-44 | 8 | 138 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-23 | 17 | 114 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MSEVSVINQT AGQLELPPGF RFHPTDEEIV THYLTPKALD RFFTSGIIGE DRKYPTGTRT 60 NRATESGYWK ATGKDKEIFR GRGVLVGMKK TLVFYRGRAP RGEKTEWVMH EFRLEGKLPQ 120 PLPRSAKDEW AVCKVVNKEL LAAKPGASIV TAGAEIERVG SLGFISDLLD SAAELPPLMD 180 PTFGADVDEV IDFKGLASTS TSGHGAAPGG VSYLPVKTEE QYLHHHQQPQ STPMFYTGSS 240 PYFSLPEVNS GDIQTAIRRY CKAEQVASGQ TTSVVSPSRE TGLSTDPNAA AGYAEISSAA 300 TPSSSHHHHH PFLQELDDPV LNLADIWKY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-33 | 13 | 144 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-33 | 13 | 144 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-33 | 13 | 144 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-33 | 13 | 144 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-33 | 13 | 144 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-33 | 13 | 144 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004984514.1 | 1e-169 | NAC domain-containing protein 79 | ||||
TrEMBL | A0A368SRF4 | 1e-167 | A0A368SRF4_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ib01526.1.p | 1e-169 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1862 | 38 | 104 |