PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03975.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

SBP

Protein Properties

Length: 603aa MW: 63640.1 Da PI: 9.8786

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03975.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.8	2e-40	111	187	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC++ l+ akeyhrrhkvCe+hskap v+v g eqrfCqqCsrfh+lsefD++krsCrrrLa+hnerrrk++ Zmw_sc03975.1.g00030.1.am.mk 111 RCQVEGCHVLLAGAKEYHRRHKVCEAHSKAPRVVVLGAEQRFCQQCSRFHALSEFDDAKRSCRRRLAGHNERRRKSS 187 6**************************************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.6E-33	105	173	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.505	109	186	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	8.11E-38	110	189	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.0E-31	112	185	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0010229	Biological Process	inflorescence development
GO:0010321	Biological Process	regulation of vegetative phase change
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 603 aa Download sequence Send to blast
MDGNGGGSGT ATPSWDPGTH WAPAGSSGYP QPFAPRLGSG PSRDQQQHQQ EQTWLNLGKQ 60 PCCWAGAGGN QQGPQPSSWG HVHGNGGGTG GGSEAAAAAE GKRKEKAAAP RCQVEGCHVL 120 LAGAKEYHRR HKVCEAHSKA PRVVVLGAEQ RFCQQCSRFH ALSEFDDAKR SCRRRLAGHN 180 ERRRKSSASE TMARTVGHSH GLMPFGHGFF PSSPAGALSL LSSARGGGAP WLIPATADIS 240 TRSSAALDEL IAENRRALLA WQFFSEHSPA GRLVPSSSTG RVLPAGEVPA GWHTAQIQDH 300 PGGGGGRADD RYSFSEAPAG AGHTTLDLMQ TPDTSAGAPF LKPVSERAGS ARTPRKDGGD 360 AGCTSVDAWA SAEGAPDRVH RCPPRPARAE SQKRSGSSSV VSLNHQLQSR RRRGRRPSQT 420 NGGERLITVP TCRSELWDDG ASYVSPRSAM MAIMASPMRG SAIGFGKCGP YVVCKESHKR 480 ETTYAAMAGP SAFRFVALIA VMSILSLLAF PVSCHEDPAA EVTDESRQNT TTRRQAWAAA 540 ARGYGGWSYG GATWYGSPYG AGGDGFVGRS LCASGKRERG CIGRGGMVIF VPPRPLLELL 600 LPK

Sequence ? help Back to Top

Protein Sequence Length: 603 aa Download sequence Send to blast

MDGNGGGSGT ATPSWDPGTH WAPAGSSGYP QPFAPRLGSG PSRDQQQHQQ EQTWLNLGKQ  60
PCCWAGAGGN QQGPQPSSWG HVHGNGGGTG GGSEAAAAAE GKRKEKAAAP RCQVEGCHVL  120
LAGAKEYHRR HKVCEAHSKA PRVVVLGAEQ RFCQQCSRFH ALSEFDDAKR SCRRRLAGHN  180
ERRRKSSASE TMARTVGHSH GLMPFGHGFF PSSPAGALSL LSSARGGGAP WLIPATADIS  240
TRSSAALDEL IAENRRALLA WQFFSEHSPA GRLVPSSSTG RVLPAGEVPA GWHTAQIQDH  300
PGGGGGRADD RYSFSEAPAG AGHTTLDLMQ TPDTSAGAPF LKPVSERAGS ARTPRKDGGD  360
AGCTSVDAWA SAEGAPDRVH RCPPRPARAE SQKRSGSSSV VSLNHQLQSR RRRGRRPSQT  420
NGGERLITVP TCRSELWDDG ASYVSPRSAM MAIMASPMRG SAIGFGKCGP YVVCKESHKR  480
ETTYAAMAGP SAFRFVALIA VMSILSLLAF PVSCHEDPAA EVTDESRQNT TTRRQAWAAA  540
ARGYGGWSYG GATWYGSPYG AGGDGFVGRS LCASGKRERG CIGRGGMVIF VPPRPLLELL  600
LPK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-29	112	185	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00290	DAP	Transfer from AT2G33810	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004978167.1	1e-115	squamosa promoter-binding-like protein 7
Swissprot	Q7XT42	1e-102	SPL7_ORYSJ; Squamosa promoter-binding-like protein 7
TrEMBL	A0A0A9F931	1e-120	A0A0A9F931_ARUDO; Uncharacterized protein
STRING	Si010262m	1e-115	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10303	34	39

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]