PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc03973.1.g00070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRF | ||||||||
Protein Properties | Length: 380aa MW: 41115.1 Da PI: 8.8839 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.5 | 2.7e-24 | 136 | 179 | 2 | 45 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+ Zmw_sc03973.1.g00070.1.am.mk 136 LEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVEA 179 69***************************************996 PP | |||||||
2 | QLQ | 54.4 | 3.7e-19 | 55 | 91 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+FT aQ ++L++Q+l+yKyL+a++ vP++Ll++i++ Zmw_sc03973.1.g00070.1.am.mk 55 SPFTQAQYEELEQQALIYKYLLAGVAVPQDLLLPIRR 91 89*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.6E-11 | 55 | 91 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.07 | 56 | 91 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 7.9E-13 | 56 | 90 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.711 | 135 | 179 | IPR014977 | WRC domain |
Pfam | PF08879 | 7.7E-21 | 137 | 178 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MHLASLSPAE DHRASSATTL LPFCRASPLS SAVGADAQQP QPQQYAMSGR WARPSPFTQA 60 QYEELEQQAL IYKYLLAGVA VPQDLLLPIR RGFVYHQPAH PHLLNATGLH VMRDSRGKIL 120 LPPVGYGPYL GKKVDLEPGR CRRTDGKKWR CSKEAAPDSK YCERHMHRGR NRSRKPVEAQ 180 LVAAPLSQPP APPANLAGGF QNHTLYPAIA GSGAGRGGAA TGTFGLGSSG LLHMDTAAPY 240 ATAAGGGSKD LSQLISGGMD SSMDNSWRLL PSQTSPFQVS SYPLYGTLSG LDESTICSLP 300 KTEREPSFFE SDFATNSAKQ ENQTLRPFFD EWPKSRDSWS ELPDNNSLSS FSATQLSISI 360 PMGTSDFNTS SRSPHGIQSR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004976689.1 | 1e-160 | growth-regulating factor 3 | ||||
Swissprot | Q6AWY6 | 1e-149 | GRF3_ORYSJ; Growth-regulating factor 3 | ||||
TrEMBL | A0A0A9GJC3 | 1e-163 | A0A0A9GJC3_ARUDO; GRF5 | ||||
STRING | Si011853m | 1e-157 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2463 | 34 | 76 |