PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03956.1.g00050.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MIKC_MADS
Protein Properties Length: 424aa    MW: 47343.8 Da    PI: 9.9455
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03956.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.14.9e-28204254151
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                                   krien +nrqvt+skRr+gi+KKA EL vLCda+va+i+fsstgk +e++s
  Zmw_sc03956.1.g00050.1.sm.mk 204 KRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKSHEFCS 254
                                   79***********************************************96 PP
2K-box622.3e-21266358198
                         K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelq 81 
                                   yq++ g+sl+++++e++q+ l+ Lk+ ++nL++e+R+++GedL+ L++ eL+ Leq+++ +lk      ++++ +q+e+ +
  Zmw_sc03956.1.g00050.1.sm.mk 266 YQQTVGTSLWTEQYENMQRTLSHLKDINRNLRTEIRQRMGEDLDGLEFDELRGLEQNVDVALK-----EYHVISTQTETYK 341
                                   78899999*****************************************************97.....599********** PP

                         K-box  82 kkekelqeenkaLrkkl 98 
                                   kk k   e+ ++L+++l
  Zmw_sc03956.1.g00050.1.sm.mk 342 KKVKHSYEAYRNLQQEL 358
                                   ********999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.254196256IPR002100Transcription factor, MADS-box
SMARTSM004323.7E-42196255IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.16E-35197290IPR002100Transcription factor, MADS-box
CDDcd002651.16E-41197275No hitNo description
PRINTSPR004041.6E-27198218IPR002100Transcription factor, MADS-box
PfamPF003199.5E-24205252IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-27218233IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-27233254IPR002100Transcription factor, MADS-box
PfamPF014862.5E-13277358IPR002487Transcription factor, K-box
PROSITE profilePS5129711.452279364IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MHYPEREEQE ANDDPEAKTV LTVVPKATPI LHSLPRIQHG ATDRTVKRPN GRRPGASFSR  60
ARHEASQARQ HGATGRHGQA RRPTLSPIRQ LSVTVARPGL VLATPKSLVF VLFTPPPPPP  120
PSPTPYHQQR QLERAPSPSF SSSLSLCLVH LTLFRVPVPA EFIISHQLLA LLDLKKSIAP  180
EKQLARSTTE DLDKKMGRGK IEIKRIENAT NRQVTYSKRR TGIMKKAREL TVLCDAQVAI  240
IMFSSTGKSH EFCSPGTDIK TIFDRYQQTV GTSLWTEQYE NMQRTLSHLK DINRNLRTEI  300
RQRMGEDLDG LEFDELRGLE QNVDVALKEY HVISTQTETY KKKVKHSYEA YRNLQQELGM  360
REEPAYGYVD NTGAGWDGAV AQLGGGGSAA TATATATDMY AFRVVPTQPN LHGVAYGSHD  420
LRLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-16196268171MEF2C
5f28_B2e-16196268171MEF2C
5f28_C2e-16196268171MEF2C
5f28_D2e-16196268171MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. Required for normal development of lodicules and stamens (whorls 2 and 3). May function as a heterodimer with MADS4. {ECO:0000269|PubMed:12506001, ECO:0000269|PubMed:12905025, ECO:0000269|PubMed:14558657}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812646.11e-146MADS-box transcription factor 16
SwissprotQ944S91e-130MAD16_ORYSJ; MADS-box transcription factor 16
TrEMBLA0A2S3HGN11e-144A0A2S3HGN1_9POAL; Uncharacterized protein
TrEMBLA0A2T7DU701e-144A0A2T7DU70_9POAL; Uncharacterized protein
STRINGSi007221m1e-145(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57283552
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chen ZX, et al.
    Morphogenesis and molecular basis on naked seed rice, a novel homeotic mutation of OsMADS1 regulating transcript level of AP3 homologue in rice.
    Planta, 2006. 223(5): p. 882-90
    [PMID:16254725]
  3. Zhang Q, et al.
    Morphological, anatomical and genetic analysis for a rice mutant with abnormal hull.
    J Genet Genomics, 2007. 34(6): p. 519-26
    [PMID:17601611]
  4. Yoshida H, et al.
    superwoman1-cleistogamy, a hopeful allele for gene containment in GM rice.
    Plant Biotechnol. J., 2007. 5(6): p. 835-46
    [PMID:17764519]
  5. Yao SG,Ohmori S,Kimizu M,Yoshida H
    Unequal genetic redundancy of rice PISTILLATA orthologs, OsMADS2 and OsMADS4, in lodicule and stamen development.
    Plant Cell Physiol., 2008. 49(5): p. 853-7
    [PMID:18378529]
  6. Xiao H, et al.
    STAMENLESS 1, encoding a single C2H2 zinc finger protein, regulates floral organ identity in rice.
    Plant J., 2009. 59(5): p. 789-801
    [PMID:19453444]
  7. Seok HY, et al.
    Rice ternary MADS protein complexes containing class B MADS heterodimer.
    Biochem. Biophys. Res. Commun., 2010. 401(4): p. 598-604
    [PMID:20888318]
  8. Li H, et al.
    Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate.
    Plant Cell, 2011. 23(7): p. 2536-52
    [PMID:21784949]
  9. Sato H,Yoshida K,Mitsuda N,Ohme-Takagi M,Takamizo T
    Male-sterile and cleistogamous phenotypes in tall fescue induced by chimeric repressors of SUPERWOMAN1 and OsMADS58.
    Plant Sci., 2012. 183: p. 183-9
    [PMID:22195592]
  10. Ohmori S,Tabuchi H,Yatou O,Yoshida H
    Agronomic traits and gene containment capability of cleistogamous rice lines with the superwoman1-cleistogamy mutation.
    Breed. Sci., 2012. 62(2): p. 124-32
    [PMID:23136523]
  11. Yun D, et al.
    OsMADS16 genetically interacts with OsMADS3 and OsMADS58 in specifying floral patterning in rice.
    Mol Plant, 2013. 6(3): p. 743-56
    [PMID:23300256]
  12. Lombardo F, et al.
    The superwoman1-cleistogamy2 mutant is a novel resource for gene containment in rice.
    Plant Biotechnol. J., 2017. 15(1): p. 97-106
    [PMID:27336225]