PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03937.1.g00090.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 423aa    MW: 46291.8 Da    PI: 9.8722
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03937.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2193.8e-06111133123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C++Cgk F r  nL+ H r H
  Zmw_sc03937.1.g00090.1.am.mk 111 FVCEICGKGFQRDQNLQLHRRGH 133
                                   89*******************88 PP
2zf-C2H213.60.0002187209123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC +C+k++  +s+ k H +t+
  Zmw_sc03937.1.g00090.1.am.mk 187 WKCDKCNKRYAVQSDWKAHSKTC 209
                                   58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.09E-7110133No hitNo description
Gene3DG3DSA:3.30.160.601.2E-5111133IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.614111133IPR007087Zinc finger, C2H2
SMARTSM003550.012111133IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
SMARTSM00355250152182IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.6E-5175208IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.09E-7182207No hitNo description
SMARTSM00355110187207IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MLEVAVSLIS SPLLFIDRID STAGGSDQII QAAPPTTHGF RPLLVAPVLI CRQHLSQMGL  60
GKAAMLNRAL ELAPPAKRKR NLPGTPGKSS CYPDAEVIAL SPRTLLATNR FVCEICGKGF  120
QRDQNLQLHR RGHNLPWKLR QRSGKEPRKR VYVCPEKTCV HHNPSRALGD LTGIKKHFCR  180
KHGEKKWKCD KCNKRYAVQS DWKAHSKTCG TREYRCDCGT LFSRRDSFVT HRAFCDALAE  240
ETARLNNQRQ NHHPYLLAAA SSSTTPPASI SLMPSMGHIA NVLAGAGEPT VPSPQLPLTT  300
WQFDSTSSLQ QLGWLYDGNN NGRKLSISKD VPSLFSSQQH ANPAAPAPDM SATALLLKAT  360
QIGAVTSSVV GTCFEPSGAS SHRQQNSRLG NVPFDDVLSA VRHAGLEQLD AVGREETRDF  420
LGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-35183252372Zinc finger protein JACKDAW
5b3h_F1e-35183252372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818706.11e-148zinc finger protein MAGPIE-like
RefseqXP_025818707.11e-148zinc finger protein MAGPIE-like
SwissprotQ9FFH31e-112IDD8_ARATH; Zinc finger protein NUTCRACKER
TrEMBLA0A1E5VAN51e-149A0A1E5VAN5_9POAL; Zinc finger protein MAGPIE
STRINGOS01T0242200-011e-145(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  2. Long Y, et al.
    In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots.
    Nature, 2017. 548(7665): p. 97-102
    [PMID:28746306]