PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc03937.1.g00050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | G2-like | ||||||||
Protein Properties | Length: 475aa MW: 52367.8 Da PI: 7.2539 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 77.3 | 1.9e-24 | 140 | 189 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k +++WtpeLH+rFv+aveqL G++kA+P++ile+m+++gLt+++++SHLQ Zmw_sc03937.1.g00050.1.am.mk 140 KRKVNWTPELHRRFVQAVEQL-GIDKAVPSRILEIMGIEGLTRHNIASHLQ 189 5799*****************.***************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.14 | 137 | 196 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-22 | 138 | 189 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.27E-14 | 140 | 189 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-23 | 140 | 190 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.7E-7 | 142 | 189 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 475 aa Download sequence Send to blast |
LDVDVGFPTS TDCGGVDEFM AVDGDNLLEY IDFTCCDVVP SFFDADGDIL PDLETELLAE 60 FEDHDDKENE DEKWLLLEEE EDHRKKRSGS SEDEVLLSAA TTEDSAAAAG SSSDTSKSSS 120 VSAEGQISKK KKSSKKSNGK RKVNWTPELH RRFVQAVEQL GIDKAVPSRI LEIMGIEGLT 180 RHNIASHLQV NGVVSIRFVY NIFLGPKRAK RRRQGGGRLH ATRQRMHGPA STSCAQIPIE 240 RYDRMNELYL YIYRKHLMAR EAEAASWAQK RQMYAAAAVG TPRTTKDVMP PAAPRPYWAV 300 PTSSTIGFPP PPFLHVWGHP PTAMEAAVPM LPVWPRHLAP PRPWAPLDPA VFWHQQYNGA 360 RKWGPQAVPQ MPPAAAAAML PRFPAPVPGT MMPHPMYRPR MPPPPQITGS TSQLQLDAHP 420 SKESIDAAIG DVLVKPWLPL PLGLKPPSLD SVMSELHKQG IPKIPPAATA TGRQP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 205 | 211 | PKRAKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:11340194}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008673438.1 | 2e-98 | golden plant 2 isoform X1 | ||||
Swissprot | Q5NAN5 | 5e-64 | GLK2_ORYSJ; Probable transcription factor GLK2 | ||||
TrEMBL | A0A1D6MES1 | 4e-97 | A0A1D6MES1_MAIZE; Golden plant2 | ||||
STRING | GRMZM2G087804_P03 | 2e-96 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2415 | 38 | 86 |
Publications ? help Back to Top | |||
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