PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03927.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 413aa    MW: 44304.3 Da    PI: 9.508
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03927.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B395.43.7e-30100192189
                                   EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 
                                   f+kv tpsdv+k++rlv+pk++ae++         + ++  l++ed+ g++W+++++y+++s++yv+tkGW++Fvk+++L 
  Zmw_sc03927.1.g00040.1.am.mk 100 FDKVVTPSDVGKLNRLVIPKQYAEKYfpldsaA--NDKGLLLSFEDSAGKQWRFRYSYWNSSQSYVMTKGWSRFVKEKRLV 178
                                   89*************************999643..447789**************************************** PP

                                   TT-EEEEEE-SSSE CS
                            B3  76 egDfvvFkldgrse 89 
                                   +gD+v F++   +e
  Zmw_sc03927.1.g00040.1.am.mk 179 AGDTVSFSRAAAEE 192
                                   ********663322 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-4190206IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-2997205IPR015300DNA-binding pseudobarrel domain
CDDcd100172.04E-2698187No hitNo description
SMARTSM010196.5E-22100205IPR003340B3 DNA binding domain
PROSITE profilePS5086314.706100203IPR003340B3 DNA binding domain
PfamPF023621.8E-27100199IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MDHFPASGRF SKEEEADEEQ AEDAPNSRRE IPFMPACSAA TASSSAAASA SSASAASASA  60
SSSVPFRSAS GDGAGASGSG AVGGEEGEEK AEAVEKEHMF DKVVTPSDVG KLNRLVIPKQ  120
YAEKYFPLDS AANDKGLLLS FEDSAGKQWR FRYSYWNSSQ SYVMTKGWSR FVKEKRLVAG  180
DTVSFSRAAA EEARHRLFID WKRRTDNRDP FRFPRFALPM PLASHYGPHY SPWGYGGGGG  240
SGFFLPPSPP ATLYEHRLRQ GLDFRGMNYH PAPAVGRQVL YFGSARMPPH APLLPRAPSP  300
LQYTVQPSGA GVTAASPVVL DSVPVIESPT TGAKRVRLFG VNLDNRDSGG GGGEPSNLQG  360
NTLSLQMPGR QQRTPTLRLL ELPRRGAQSS AASSPSSSSS SKRDARSALD LDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-57952043113B3 domain-containing transcription factor NGA1
5os9_B2e-57952043113B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794708.10.0B3 domain-containing protein Os02g0683500-like
SwissprotQ6EU301e-151Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLA0A2S3GSD91e-180A0A2S3GSD9_9POAL; Uncharacterized protein
STRINGPavir.Aa00929.1.p1e-173(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]