PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03923.1.g00060.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MIKC_MADS
Protein Properties Length: 222aa    MW: 24909.1 Da    PI: 6.6916
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03923.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.51.6e-27959151
                                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                    krie+   rqvtfskRr g++KKAeELSvLCda+va+i+fsstgkl  ++s
  Zmw_sc03923.1.g00060.1.sm.mkhc  9 KRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSQFAS 59
                                    79*********************************************9986 PP
2K-box56.51.2e-19901711899
                           K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                                     + ++a+L++++ +    +R++ Ge+Le Ls++eLq+Le++Le +l ++ ++K++ +leqi++lq+k  +l een++Lr+
  Zmw_sc03923.1.g00060.1.sm.mkhc  90 HSKYANLNEQLAEASLRLRQMRGEELEGLSVEELQRLEKNLEAGLHRVLQTKDQQFLEQINDLQRKSSQLAEENMQLRN 168
                                     345566666666666889************************************************************9 PP

                           K-box  97 kle 99 
                                     ++ 
  Zmw_sc03923.1.g00060.1.sm.mkhc 169 QVS 171
                                     985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.413161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-30274IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
CDDcd002653.60E-39375No hitNo description
PfamPF003191.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-253859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.77186176IPR002487Transcription factor, K-box
PfamPF014869.1E-1891170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MTRERREIKR IESAAARQVT FSKRRRGLFK KAEELSVLCD ADVALIVFSS TGKLSQFASS  60
SMNEIIDKYN THSKNLGKAE QPSLDLNLEH SKYANLNEQL AEASLRLRQM RGEELEGLSV  120
EELQRLEKNL EAGLHRVLQT KDQQFLEQIN DLQRKSSQLA EENMQLRNQV SQIAPAAKQA  180
VVDTENVVAE DGQSSESVMT ALHSGSYLVF HGSNNVKAPL LV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-19173173MEF2C
5f28_B1e-19173173MEF2C
5f28_C1e-19173173MEF2C
5f28_D1e-19173173MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May be required for spikelet (rice flower) development. {ECO:0000269|PubMed:15682279}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810223.11e-139MADS-box transcription factor 22
SwissprotQ9XJ661e-130MAD22_ORYSJ; MADS-box transcription factor 22
TrEMBLA0A3L6RPX91e-138A0A3L6RPX9_PANMI; MADS-box transcription factor 22
STRINGSb04g033930.11e-138(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12213697
Publications ? help Back to Top
  1. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  2. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]