PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03916.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ARF
Protein Properties Length: 376aa    MW: 42708.5 Da    PI: 7.0739
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03916.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.18.3e-2463164199
                                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS
                              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 
                                     f k+lt sd++++g +++ +++a+e+      + + + +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+a++
  Zmw_sc03916.1.g00030.1.am.mkhc  63 FYKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGSEWRFRHIFRGQPRRHLLQSGWSVFVSAKR 140
                                     789****************************7333.34459************************************** PP

                                     --TT-EEEEEE-SSSEE..EEEEE-S CS
                              B3  74 LkegDfvvFkldgrsefelvvkvfrk 99 
                                     L +gD ++F   + +++el+v+v+r+
  Zmw_sc03916.1.g00030.1.am.mkhc 141 LVAGDAFIFL--RGDNGELRVGVRRA 164
                                     **********..3489999****996 PP
2Auxin_resp114.41e-37187269183
                      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkW 79 
                                     a+ha++t+++F+v+Y+Pr+s++eFvv++++++++lk+++s+GmRfkm+fe+e+++e+r++Gt+vg+ d d+  Wp+SkW
  Zmw_sc03916.1.g00030.1.am.mkhc 187 AWHAVNTGTMFTVYYKPRTSPAEFVVPCDRYMESLKQNYSIGMRFKMRFEGEEAPEQRFTGTIVGIGDPDSGGWPESKW 265
                                     89***************************************************************************** PP

                      Auxin_resp  80 rsLk 83 
                                     rsLk
  Zmw_sc03916.1.g00030.1.am.mkhc 266 RSLK 269
                                     **96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.2E-4056173IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.16E-3958190IPR015300DNA-binding pseudobarrel domain
CDDcd100171.16E-2161163No hitNo description
PfamPF023629.6E-2263164IPR003340B3 DNA binding domain
PROSITE profilePS5086312.13963165IPR003340B3 DNA binding domain
SMARTSM010198.1E-2263165IPR003340B3 DNA binding domain
PfamPF065072.0E-35187269IPR010525Auxin response factor
PROSITE profilePS5174517.852308376IPR000270PB1 domain
SuperFamilySSF542775.4E-9313376No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009737Biological Processresponse to abscisic acid
GO:0009911Biological Processpositive regulation of flower development
GO:0010047Biological Processfruit dehiscence
GO:0010150Biological Processleaf senescence
GO:0010227Biological Processfloral organ abscission
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MQMYNLPWKI PCEVMNVELK AEPDTDEVYA QLTLLPESKQ EENASSGDAA PPPAPVRPRV  60
HSFYKTLTAS DTSTHGGFSV LRRHADECLP PLDMSRQPPT QELVAKDLHG SEWRFRHIFR  120
GQPRRHLLQS GWSVFVSAKR LVAGDAFIFL RGDNGELRVG VRRAMRQQAP SSVISSHSMH  180
LGVLATAWHA VNTGTMFTVY YKPRTSPAEF VVPCDRYMES LKQNYSIGMR FKMRFEGEEA  240
PEQRFTGTIV GIGDPDSGGW PESKWRSLKV RWDEASSIPR PERVSPWQIE PAVSSPPINP  300
LPVPRTKRPR PNVHKQGIAL GRSVDLTKFN DYDELISELD EMFDFNGELK NSKKEWMVVY  360
TDNEGDMMLV GDDPWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldx_A1e-149129164354Auxin response factor 1
4ldx_B1e-149129164354Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1306310KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00574DAPTransfer from AT5G62000Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under light or dark conditions and gravitropic stimulation of coleptile. {ECO:0000269|PubMed:12369618, ECO:0000269|PubMed:17408882}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001307052.10.0auxin response factor
RefseqXP_014758384.10.0auxin response factor 23 isoform X2
SwissprotQ2R3F50.0ARFW_ORYSJ; Auxin response factor 23
TrEMBLA0A0E0F6800.0A0A0E0F680_9ORYZ; Auxin response factor
STRINGOMERI11G12320.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Publications ? help Back to Top
  1. Contreras I,Ortiz-Zapater E,Castilho LM,Aniento F
    Characterization of Cop I coat proteins in plant cells.
    Biochem. Biophys. Res. Commun., 2000. 273(1): p. 176-82
    [PMID:10873582]
  2. Kobayashi-Uehara A,Shimosaka E,Handa H
    Cloning and expression analyses of cDNA encoding an ADP-ribosylation factor from wheat: tissue-specific expression of wheat ARF.
    Plant Sci., 2001. 160(3): p. 535-542
    [PMID:11166441]
  3. Ren H, et al.
    Combinative effects of a bacterial type-III effector and a biocontrol bacterium on rice growth and disease resistance.
    J. Biosci., 2006. 31(5): p. 617-27
    [PMID:17301500]
  4. Song Y,You J,Xiong L
    Characterization of OsIAA1 gene, a member of rice Aux/IAA family involved in auxin and brassinosteroid hormone responses and plant morphogenesis.
    Plant Mol. Biol., 2009. 70(3): p. 297-309
    [PMID:19266169]
  5. Kitajima A, et al.
    The rice alpha-amylase glycoprotein is targeted from the Golgi apparatus through the secretory pathway to the plastids.
    Plant Cell, 2009. 21(9): p. 2844-58
    [PMID:19767453]
  6. Kishimoto N, et al.
    Identification of the duplicated segments in rice chromosomes 1 and 5 by linkage analysis of cDNA markers of known functions.
    Theor. Appl. Genet., 1994. 88(6-7): p. 722-6
    [PMID:24186168]
  7. Sugano SS, et al.
    CRISPR/Cas9-mediated targeted mutagenesis in the liverwort Marchantia polymorpha L.
    Plant Cell Physiol., 2014. 55(3): p. 475-81
    [PMID:24443494]
  8. Kaneko K, et al.
    N-Glycomic and Microscopic Subcellular Localization Analyses of NPP1, 2 and 6 Strongly Indicate that trans-Golgi Compartments Participate in the Golgi to Plastid Traffic of Nucleotide Pyrophosphatase/Phosphodiesterases in Rice.
    Plant Cell Physiol., 2016. 57(8): p. 1610-28
    [PMID:27335351]