PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03912.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YA
Protein Properties Length: 272aa    MW: 29803.3 Da    PI: 10.7617
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03912.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.16e-33123178258
                       CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                     ep++VNaKQy++Il+RRq+Rakle++++l  k rkpylheSRh+hA++R+RgsgGrF
  Zmw_sc03912.1.g00020.1.sm.mkhc 123 EPIFVNAKQYHAILRRRQTRAKLEAQNNL-VKDRKPYLHESRHQHAMKRARGSGGRF 178
                                     8****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.2E-36120181IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.98121181IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.1E-28123178IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.1E-24124146IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860126146IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.1E-24155178IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MEDDPVRPMY KPNSGVLSGN GSRVKQSDLR LHNMDSSSEG GWSHPGASAM SSSSLNEQTA  60
TQSDNNLHGK HGQNMESPPL SLGKQEVAFS AQNSDCSSSF VHPHQNIISN SSAPLPAEAV  120
AVEPIFVNAK QYHAILRRRQ TRAKLEAQNN LVKDRKPYLH ESRHQHAMKR ARGSGGRFLK  180
TKQLHEQNQQ HQASGNSRSM QVTDQNVSSQ SGSTLMPPIP GPPDIASVSR ANQDRSCFPS  240
VGFRPPMNLS MKGGRNTKLV VNGMQHRVSI MR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-22123183363NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800585.18e-88nuclear transcription factor Y subunit A-4-like isoform X1
RefseqXP_025800586.18e-88nuclear transcription factor Y subunit A-4-like isoform X1
RefseqXP_025800587.18e-88nuclear transcription factor Y subunit A-4-like isoform X1
RefseqXP_025800588.18e-88nuclear transcription factor Y subunit A-4-like isoform X1
TrEMBLA0A0A9DJ424e-94A0A0A9DJ42_ARUDO; Uncharacterized protein
STRINGPavir.Ba00442.1.p1e-88(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137338121