PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc03904.1.g00070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | G2-like | ||||||||
Protein Properties | Length: 217aa MW: 23299.5 Da PI: 9.9915 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 92.3 | 4e-29 | 89 | 145 | 2 | 54 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ....kYR 54 pr+rWt+ LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ +YR Zmw_sc03904.1.g00070.1.sm.mk 89 PRMRWTTALHAHFVQAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQarapMYR 145 9*************************************************5555566 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.51E-14 | 85 | 140 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.9E-26 | 86 | 146 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.2E-21 | 89 | 138 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.9E-6 | 90 | 138 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MNSTTVTGAT PDLSLHISPP SPADGGGETP EPSSTLRLGL DTAAKTVVDA AQRGLLVQQR 60 LHQPSQTAHG FKKSSGAGAR GRKRCSRAPR MRWTTALHAH FVQAVELLGG HERATPKSVL 120 ELMNVKDLTL AHVKSHLQAR APMYRTVKST DRSCVAGHGQ AREMGFLMGR GDAPEMDGLF 180 DGFNCNVVNT TAMFSSNSST SRLLGPVLKE EAYMHEL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-15 | 90 | 148 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-15 | 90 | 148 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-15 | 90 | 148 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-15 | 90 | 148 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-15 | 90 | 148 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-15 | 90 | 148 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-15 | 90 | 148 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-15 | 90 | 148 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:19054366, ECO:0000269|PubMed:20444210}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020183178.1 | 2e-68 | probable transcription factor KAN4 | ||||
Swissprot | Q9FJV5 | 3e-35 | KAN4_ARATH; Probable transcription factor KAN4 | ||||
TrEMBL | A0A0A9GQA6 | 4e-81 | A0A0A9GQA6_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.J09156.1.p | 1e-69 | (Panicum virgatum) | ||||
STRING | Traes_5DS_39E5EF501.2 | 1e-69 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3742 | 31 | 68 |
Publications ? help Back to Top | |||
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