PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03904.1.g00050.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 679aa    MW: 77889 Da    PI: 9.166
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03904.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.53.6e-1629117299
                                   EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                            B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                                   fk +     +++g +++p kf++++++ + e   + l+ +sg++W++ l  +k++++ +l +GW +F ka++L+e+D +vF
  Zmw_sc03904.1.g00050.1.am.mk  29 FKLM--TGDFAKG-ISIPEKFVRNFKITE-E--AVDLKVTSGETWRIIL--EKRDNELYLMSGWMDFSKAQELRENDLLVF 101
                                   5555..4445555.9*******8887664.4..599999**********..****************************** PP

                                   EE-SS.SEE..EEEEE-S CS
                            B3  83 kldgr.sefelvvkvfrk 99 
                                   +  ++ s+f   v+vf++
  Zmw_sc03904.1.g00050.1.am.mk 102 TCRNErSSF--DVQVFEE 117
                                   *65444665..9999875 PP

2B342.61.1e-13230328199
                                   EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                            B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                                   f++vl +s+  ++ + +++p   a++h   +++s++++l+ ++  +sW+v++ y  +s r++      +Fv++n+L+egD+
  Zmw_sc03904.1.g00050.1.am.mk 230 FVTVLQKSHCQRRnNSMTIPSGLAADHL--EARSQDIILRRPHRkESWTVRY-YYTSSHRCIQNLQFFNFVRENKLREGDV 307
                                   6667777776665588*********996..457889*****877699*****.777777777777799************* PP

                                   EEEEE-SS.SEE..EEEEE-S CS
                            B3  80 vvFkldgr.sefelvvkvfrk 99 
                                   ++F+l++  ++ +++v+v+r+
  Zmw_sc03904.1.g00050.1.am.mk 308 CLFELVKGaRRVTMTVHVVRR 328
                                   ****99877999*****9997 PP

3B351.41.9e-163714521499
                                   T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                            B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                                   +rl++p kf ++  ++ + +k  +l+ +sg+ W v +  +k++++  +t+GW +F+ a+gL+e+D +vF+++g+++f   v
  Zmw_sc03904.1.g00050.1.am.mk 371 QRLIIPQKFGNALTLNANATKRFSLKAPSGEPWIVGV--TKHGDELCFTSGWGDFAVAHGLQENDLLVFTRSGKRSF--DV 447
                                   57********99999999999****************..*******************************8877777..89 PP

                                   EEE-S CS
                            B3  95 kvfrk 99 
                                   +vf++
  Zmw_sc03904.1.g00050.1.am.mk 448 MVFDA 452
                                   99886 PP

4B332.41.6e-105856701899
                                   --HHH.HTT---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..E CS
                            B3  18 lpkkfaeehggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..gr.sefelv 93 
                                   l k+++++ ++   +s ++ l    ++ ++W v++ y +++ r +  + W +Fv++n+L+  D++vF+l+  g  +++++v
  Zmw_sc03904.1.g00050.1.am.mk 585 LQKSHMNRKNNRLMRSHEVLLLRpgRKEQKWHVRY-YHGSGTRGFGCRRWVKFVRDNRLRRDDVCVFELVkkGGaRRTTMV 664
                                   55666655543444556666666235569******.6666666666679*******************8744455777888 PP

                                   EEEE-S CS
                            B3  94 vkvfrk 99 
                                   v+v+rk
  Zmw_sc03904.1.g00050.1.am.mk 665 VHVVRK 670
                                   888876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-1621120IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.50625118IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.8E-1725120IPR015300DNA-binding pseudobarrel domain
CDDcd100179.73E-1727115No hitNo description
PfamPF023621.7E-1228116IPR003340B3 DNA binding domain
SMARTSM010191.9E-1128118IPR003340B3 DNA binding domain
SuperFamilySSF1019361.79E-17224328IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-19225329IPR015300DNA-binding pseudobarrel domain
CDDcd100171.54E-13228327No hitNo description
PfamPF023623.7E-12230328IPR003340B3 DNA binding domain
SMARTSM010192.8E-8230329IPR003340B3 DNA binding domain
PROSITE profilePS5086310.715231329IPR003340B3 DNA binding domain
SuperFamilySSF1019364.12E-19356455IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-18356455IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.211358453IPR003340B3 DNA binding domain
CDDcd100176.13E-14360451No hitNo description
SMARTSM010194.1E-9361453IPR003340B3 DNA binding domain
PfamPF023623.1E-13370452IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.4E-11574669IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-14574670IPR015300DNA-binding pseudobarrel domain
CDDcd100172.19E-11579669No hitNo description
SMARTSM010197.1E-5581671IPR003340B3 DNA binding domain
PfamPF023625.7E-8599670IPR003340B3 DNA binding domain
PROSITE profilePS508639.883602671IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MVEKGCERCR EWQEHYYRKH MDVSKMSFFK LMTGDFAKGI SIPEKFVRNF KITEEAVDLK  60
VTSGETWRII LEKRDNELYL MSGWMDFSKA QELRENDLLV FTCRNERSSF DVQVFEESGC  120
VKTPSLFGPN MCRHFGETAG RRAEHYSLSD SDDTTMPSQL VGCPRDAWRE PDSPNSSSCH  180
VKHEAVEEEE SDDMYADSKY YYSRFANQLT NDEKEEVLGL APIGRDNPVF VTVLQKSHCQ  240
RRNNSMTIPS GLAADHLEAR SQDIILRRPH RKESWTVRYY YTSSHRCIQN LQFFNFVREN  300
KLREGDVCLF ELVKGARRVT MTVHVVRRKV QGRFALMDRQ GCASCQKWRD HRSQDASRTR  360
FIKFMARDFA QRLIIPQKFG NALTLNANAT KRFSLKAPSG EPWIVGVTKH GDELCFTSGW  420
GDFAVAHGLQ ENDLLVFTRS GKRSFDVMVF DASGCEKVSS FFMLGEGDPC RRKGFGGVKM  480
GGQRAEHCGL SDSDDDAGTP LRLVESARKA SASKKKSTAG RTNPGEESTE SPDSSHEEEQ  540
SDDRRAGSNC YYYSRSASVL TEDEREEALS LVSIRPGNPA FVTVLQKSHM NRKNNRLMRS  600
HEVLLLRPGR KEQKWHVRYY HGSGTRGFGC RRWVKFVRDN RLRRDDVCVF ELVKKGGARR  660
TTMVVHVVRK RNGRLVLLG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808343.11e-145B3 domain-containing protein Os12g0592300-like
SwissprotQ2QMT21e-111Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179