PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03883.1.g00100.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 339aa    MW: 35882.9 Da    PI: 5.4132
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03883.1.g00100.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.5e-20147198256
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                   +y+GVr+++ +g+++AeIrdp+ +g   r++lg+++t+ eAa+a+++a+ +l+g+
  Zmw_sc03883.1.g00100.1.am.mk 147 KYRGVRQRP-WGKYAAEIRDPKRRG--SRVWLGTYDTPVEAARAYDRAAFRLRGA 198
                                   8********.**********96554..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.6E-32146206IPR001471AP2/ERF domain
CDDcd000181.98E-29147206No hitNo description
PfamPF008474.6E-14147197IPR001471AP2/ERF domain
PROSITE profilePS5103224.276147205IPR001471AP2/ERF domain
SMARTSM003801.4E-36147211IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-23147206IPR016177DNA-binding domain
PRINTSPR003671.6E-13148159IPR001471AP2/ERF domain
PRINTSPR003671.6E-13187207IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MEFTGEADNF AFDFDFIREH LLGGESSGVS MASSEVSHGT SFTEQPPPSA ELQSMAFMPQ  60
QQHQGDMKHA YMGSAAAPAV SAGEAAFGAH EPPAPPVMIK FGGEPSSPAR QPLTISVPPS  120
SYAWAATGAA APVATAPEPA PVEDYRKYRG VRQRPWGKYA AEIRDPKRRG SRVWLGTYDT  180
PVEAARAYDR AAFRLRGAKA ILNFPNEVGT RGADLWAPPP APQGVSANKR KRQPEEPDVE  240
VIAVLNKAAK TEVPSATSTQ VSSTASPSSM SSRETTATAS STVTSTETNE AGAGSEGFLA  300
VTPSSWSWDQ PWEAFLGGLL PLSPLSPHPS LGFPQLTVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-25146210468ATERF1
3gcc_A2e-25146210468ATERF1
5wx9_A2e-251472071474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001140538.11e-101uncharacterized protein LOC100272603
TrEMBLB4FPJ91e-100B4FPJ9_MAIZE; Ethylene-responsive transcription factor ERF105
TrEMBLK4JFF81e-100K4JFF8_MAIZE; AP2-EREBP-type transcription factor (Fragment)
STRINGPavir.J21804.1.p1e-101(Panicum virgatum)
STRINGGRMZM5G805505_P011e-101(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465