PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03882.1.g00070.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 471aa    MW: 52136.8 Da    PI: 7.8722
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03882.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.41.6e-13150202148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48 
                                   +g+WT++Ed++lv  +   G g+W+++++  g     + R++k+c++rw +yl
  Zmw_sc03882.1.g00070.1.am.mk 150 KGPWTADEDQKLVSFILGNGHGCWRAVPKLAGacpagLLRCRKSCRLRWTNYL 202
                                   79*************************************************97 PP
2Myb_DNA-binding45.32e-14212276547
                                   -HHHHHHHHHHHHHTTTT.......................-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   5 TteEdellvdavkqlGgg.......................tWktIartmgkgRtlkqcksrwqky 47 
                                   ++ E+++ vd+++qlG++                        W++Ia++++ gRt++++k++w+++
  Zmw_sc03882.1.g00070.1.am.mk 212 SEAEEKIVVDLHAQLGNRchahatprfilltelfsvrcstrEWSKIASRLP-GRTDNEIKNHWNTH 276
                                   899************************************************.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.3E-19141204IPR009057Homeodomain-like
PROSITE profilePS5129418.563145206IPR017930Myb domain
SMARTSM007172.5E-10149204IPR001005SANT/Myb domain
SuperFamilySSF466898.41E-20150206IPR009057Homeodomain-like
PfamPF002493.3E-12150202IPR001005SANT/Myb domain
CDDcd001677.43E-8152202No hitNo description
Gene3DG3DSA:1.10.10.602.6E-20205281IPR009057Homeodomain-like
SMARTSM007172.1E-10207279IPR001005SANT/Myb domain
PROSITE profilePS5129412.144207281IPR017930Myb domain
PfamPF002494.4E-11211276IPR001005SANT/Myb domain
CDDcd001671.76E-8212277No hitNo description
SuperFamilySSF466898.41E-20249278IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MSTTATASQA HRVGGDWACR EHQRKKAPFL GRRVPLLPYV SMLDDAGCFL HGKIAGGVLV  60
GWEKHGLWAT SQSLEPCVFA DLVIDDLHVV SCLTRPVPCS SPPLLPYKGS QFLITCVSEQ  120
RGVFSVLDQK LTSQVKMGRQ PCCDKVGLKK GPWTADEDQK LVSFILGNGH GCWRAVPKLA  180
GACPAGLLRC RKSCRLRWTN YLRPDLKRGL LSEAEEKIVV DLHAQLGNRC HAHATPRFIL  240
LTELFSVRCS TREWSKIASR LPGRTDNEIK NHWNTHIKKK LRKMGIDPVT HKPLLQPTQL  300
QQLSPAEARP PTPERQRQPK PNTVPAEAAT RSSSQHDKEE HPPLLSKSPG FCTDEVPMMH  360
PDEITMLSPC NDDLPTEPAS ISTPTTSHSA ASASSSCDKE ATLFPAMDEW PDTLSLVGLD  420
DMMIAAPPSP WDEYPVQPLS PVFVDPCFGA YPYQRTGAAF EQEAWNKLEL L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-221482815108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572214.11e-103transcription factor MYB20
TrEMBLI1I7771e-102I1I777_BRADI; Uncharacterized protein
STRINGBRADI3G36370.11e-103(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563