PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc03880.1.g00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 143aa MW: 16278.7 Da PI: 7.0485 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.3 | 6.7e-19 | 52 | 133 | 12 | 99 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 k+ ++p kf++++ +++ t+tle+ sg +ev++ +++ g+ v+++GWk F++a++L++gDf+vFk+dg s f Zmw_sc03880.1.g00020.1.sm.mk 52 KHFFKSMPDKFVQHFFARPAG--TVTLESHSGYAFEVEV--TNRLGKLVFEAGWKAFASAHDLNTGDFLVFKYDGLSHF-- 126 5566699*****777777766..8***************..********************************998999.. PP EEEEE-S CS B3 93 vvkvfrk 99 +v +f+ Zmw_sc03880.1.g00020.1.sm.mk 127 KVLIFDP 133 9999885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 8.91E-19 | 47 | 132 | No hit | No description |
SuperFamily | SSF101936 | 9.61E-21 | 51 | 141 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.1E-15 | 52 | 132 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.1E-7 | 54 | 134 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.8E-22 | 57 | 142 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.942 | 58 | 134 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MGEGEIVSRG YDLLVICDPR CRCDPQMRKP CKECNCKVMD GYHDQNPDKK DKHFFKSMPD 60 KFVQHFFARP AGTVTLESHS GYAFEVEVTN RLGKLVFEAG WKAFASAHDL NTGDFLVFKY 120 DGLSHFKVLI FDPSCCEKVL PCT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022679255.1 | 3e-37 | putative B3 domain-containing protein Os03g0621600 isoform X1 | ||||
TrEMBL | A0A368SHC7 | 8e-36 | A0A368SHC7_SETIT; Uncharacterized protein | ||||
STRING | Sb01g014440.1 | 1e-32 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2901 | 29 | 85 |