PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03878.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GATA

Protein Properties

Length: 289aa MW: 30545.2 Da PI: 9.9601

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03878.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	53.6	2.9e-17	116	149	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C ttkTplWR+gp g+k+LCnaCG+++rk + Zmw_sc03878.1.g00040.1.sm.mk 116 CSDCSTTKTPLWRSGPCGPKSLCNACGIRQRKAR 149 *******************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57716	8.08E-13	110	151	No hit	No description
SMART	SM00401	4.9E-16	110	161	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	1.3E-14	114	149	IPR013088	Zinc finger, NHR/GATA-type
PROSITE profile	PS50114	12.215	114	146	IPR000679	Zinc finger, GATA-type
CDD	cd00202	3.16E-14	115	152	No hit	No description
Pfam	PF00320	5.0E-15	116	149	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	116	141	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MSQQQAMLEP RHMIGGSSAA CVFTAPFPTV ESIRDRDDMI EPSSYDPYDM GKLHIGGGPI 60 EAAGAGNWTP PAKMRITRKA SADPGAGGMA VKKPRRRAQA YEDMSSPTNL GVIRVCSDCS 120 TTKTPLWRSG PCGPKSLCNA CGIRQRKARR AMMASAGAVS AESVRAATAT SSDAAAMAVH 180 LKVKKEKRAH VDRSLPFKKR CKVVQDHAAV PVAPVRAADK TAAVVADPAL SGGLVENIEL 240 ISWSRPSPSQ PATTACRSFL PAPALPVQHD EITDAAMLLM TLSCGLVRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250\|UniProtKB:Q9SZI6, ECO:0000269\|PubMed:23548780}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269\|PubMed:23548780}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025812836.1	1e-124	putative GATA transcription factor 22
Swissprot	Q6YW48	2e-56	CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBL	A0A1E5VZ48	1e-130	A0A1E5VZ48_9POAL; Uncharacterized protein
STRING	Pavir.Db01250.1.p	1e-121	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1893	38	99

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Behringer C,Schwechheimer C B-GATA transcription factors - insights into their structure, regulation, and role in plant development. Front Plant Sci, 2015. 6: p. 90 [PMID:25755661]