PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03877.1.g00080.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 923aa MW: 98847.5 Da PI: 10.4281

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03877.1.g00080.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	33.6	6.9e-11	778	806	28	56
HHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 28 eereeLAkklgLterqVkvWFqNrRakek 56 +++ LAk+l+L rqV vWFqNrRa+ k Zmw_sc03877.1.g00080.1.am.mk 778 KQKLALAKQLNLRPRQVEVWFQNRRARTK 806 57789**********************98 PP
2	HD-ZIP_I/II	89.1	5.5e-29	777	842	26	92
HD-ZIP_I/II 26 perKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk Zmw_sc03877.1.g00080.1.am.mk 777 QKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR-ALK 842 589***********************************************************9.555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	12.244	717	808	IPR001356	Homeobox domain
SMART	SM00389	5.2E-7	719	812	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.8E-14	721	745	IPR009057	Homeodomain-like
CDD	cd00086	2.35E-10	721	809	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.8E-14	777	811	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.31E-9	778	817	IPR009057	Homeodomain-like
Pfam	PF00046	2.5E-8	778	806	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	783	806	IPR017970	Homeobox, conserved site
CDD	cd14686	0.00169	799	840	No hit	No description
SMART	SM00340	1.5E-24	808	851	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	4.4E-10	808	842	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 923 aa Download sequence Send to blast
MAISVATAAE RFFHGEKKKA GTYYSGSSDG DDERGRRFRF RSSGSGMQGP GMNDARGSPD 60 PLPFMGQGHE AEACGGQSRR NDCAWRTVGP TSSRRAGWAH ASSTPRAAHT EAGFPLVSSA 120 WVPIPLSCPG GPPSVLVSSH INHAKAERVQ RQVAGPGGQS LSAARRLVWL FCYPDIVCRR 180 PSPRHQISTR RLSSGICSGL YRVLRPNGFI PLGFYSSYQA SGTEEMDRGG WPTTGRDRPR 240 SIRTHAARLL APVHHATSHT TATVSGFGGL LRGGIAIASS SSSILGMGPP RALTPSTVTS 300 PRRAAPRCTV AADRRAGGGA RARARAPCPL TRHLCSPTAS TRVELWARRV IAASCLGRFL 360 LSHVWCLVTL VDRQCELDRW RDFNNFTVVG GGVGGAWARP PLCLNASSIH ACITLRRFND 420 TDWGGPMNLG AVAFTTLRRP LHVMTSGSAA ARADLLGRKL GRASCPAVCH HEALLRRALP 480 FLPGHVRRVN RSNPPLSQAH TNTGREERVP GRLAPSCHAA AIKSRRPCEF RRFQYSTGRM 540 ELGLSLGATM ADAGRDLVLG LGMGMGVSRR EDEGAERRGK SDREEAAAAP ARRELEFGAG 600 RCGRSSPEPP ARLTFLSMEP TLGLPWPSPD TGHLLASTLA STRGFDVNRA PSCATGAAGE 660 EDDERDDAGA GGAAVSSSSP NNSAGSFPTD FSARGQAGTG GRGGDRACSR ASDEDDGGSS 720 RKKLRLSKEQ SAFLEENFKE HATLNPVSDY NSDRTEHILP QFTGIDLDVC AFFRGVQKQK 780 LALAKQLNLR PRQVEVWFQN RRARTKLKQT EVDCEYLKRC CETLTEENRR LQKELAELRA 840 LKTVNPFYMH LPATTLSMCP SCERVSSNSA TAPGASAPAA APALSSGGIG DAAPEQRPSS 900 FAALFSAPLH RPLAAQPQAP ASS

Sequence ? help Back to Top

Protein Sequence Length: 923 aa Download sequence Send to blast

MAISVATAAE RFFHGEKKKA GTYYSGSSDG DDERGRRFRF RSSGSGMQGP GMNDARGSPD  60
PLPFMGQGHE AEACGGQSRR NDCAWRTVGP TSSRRAGWAH ASSTPRAAHT EAGFPLVSSA  120
WVPIPLSCPG GPPSVLVSSH INHAKAERVQ RQVAGPGGQS LSAARRLVWL FCYPDIVCRR  180
PSPRHQISTR RLSSGICSGL YRVLRPNGFI PLGFYSSYQA SGTEEMDRGG WPTTGRDRPR  240
SIRTHAARLL APVHHATSHT TATVSGFGGL LRGGIAIASS SSSILGMGPP RALTPSTVTS  300
PRRAAPRCTV AADRRAGGGA RARARAPCPL TRHLCSPTAS TRVELWARRV IAASCLGRFL  360
LSHVWCLVTL VDRQCELDRW RDFNNFTVVG GGVGGAWARP PLCLNASSIH ACITLRRFND  420
TDWGGPMNLG AVAFTTLRRP LHVMTSGSAA ARADLLGRKL GRASCPAVCH HEALLRRALP  480
FLPGHVRRVN RSNPPLSQAH TNTGREERVP GRLAPSCHAA AIKSRRPCEF RRFQYSTGRM  540
ELGLSLGATM ADAGRDLVLG LGMGMGVSRR EDEGAERRGK SDREEAAAAP ARRELEFGAG  600
RCGRSSPEPP ARLTFLSMEP TLGLPWPSPD TGHLLASTLA STRGFDVNRA PSCATGAAGE  660
EDDERDDAGA GGAAVSSSSP NNSAGSFPTD FSARGQAGTG GRGGDRACSR ASDEDDGGSS  720
RKKLRLSKEQ SAFLEENFKE HATLNPVSDY NSDRTEHILP QFTGIDLDVC AFFRGVQKQK  780
LALAKQLNLR PRQVEVWFQN RRARTKLKQT EVDCEYLKRC CETLTEENRR LQKELAELRA  840
LKTVNPFYMH LPATTLSMCP SCERVSSNSA TAPGASAPAA APALSSGGIG DAAPEQRPSS  900
FAALFSAPLH RPLAAQPQAP ASS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	719	725	SRKKLRL
2	800	808	RRARTKLKQ

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5209	33	63