PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03876.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRF

Protein Properties

Length: 852aa MW: 93083.2 Da PI: 9.9301

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03876.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	73.7	2e-23	604	647	2	45
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrCrRtDGKkWRCs+++ +++k+CErH++rgr+rsrk++e+ Zmw_sc03876.1.g00050.1.am.mk 604 LEPGRCRRTDGKKWRCSKEAAPDSKYCERHMQRGRNRSRKPVEP 647 69***************************************997 PP
2	QLQ	59.1	1.2e-20	505	540	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT+aQ ++L++Q+l+yKyL+a++PvPpeLl++i++ Zmw_sc03876.1.g00050.1.am.mk 505 PFTPAQYEELEQQALIYKYLLAGVPVPPELLVPIRR 540 9*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.4E-13	504	540	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.6E-14	505	539	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.62	505	540	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.021	603	647	IPR014977	WRC domain
Pfam	PF08879	3.8E-20	605	646	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 852 aa Download sequence Send to blast
MLPGIQYNVQ RWSKESHVFQ VLLPHPWEGG ARNAMDGAET TCTSSLILTF PASDCRIRND 60 ATPRTYKDDD RASSPLFFSL PASIERKKNH VQILPPRLGQ STGYWTDRSS AHICKSDVER 120 ICTKVFGDLA DKETKLLDVG SLHLATLMVY NVLGFVARLV SSINMQLFGP HKDPPSLETV 180 NTRLKRRRSV CSRSDTFLAV RGTTADALPL LGLQEYNVRG TKWITREEFQ DLILTWVEKD 240 LRLVFVNKAA LAILGAPLLA VSAKNAGRRV PRMEGAVDKV PTPLLAAVFS VGLLLLQDVQ 300 HGMHAASPVQ ATARENLCLR SRAARTGCCQ RGQRSMGPCM ALSFCLCLRA QVSFFGSAML 360 VSDLVRPWEE IRDDAKRRQS QKSKWNGKAK NRSGTAKRLA VSTPTMRPPP RLSGGHEWMA 420 EGSMPPPGPS RVPAILQTGS GTPIQAHMAS RVPVACRYGD ALCLPVSGNG SPPLLPFYRA 480 SPHSAAGEDA QRQQQQAMSG RWPAPFTPAQ YEELEQQALI YKYLLAGVPV PPELLVPIRR 540 GFVYHQPPRK HASPLDLVVY SDRGVQVSRL LVRAHHITSL TKVVLCVRFA VGYGPPYFGK 600 KVDLEPGRCR RTDGKKWRCS KEAAPDSKYC ERHMQRGRNR SRKPVEPQLV AAPISQPPAQ 660 ANLAGGCQNH TLYSAIAGSG SGAARRGGGA TGVHGLGSAA QMHMDNAAPY ATAAGGGSKD 720 LRYSSYGART LAAEQSQLIS GGTDSWMENS WRLLPSQTST FQVSSYPLYG TLSGLDESTT 780 SSLPKTERQP VSLFGSDFAM QENQTLRPFF DEWPKSRGSW SELADDNSLS SFSATQLSIS 840 IPMGTSTPAP DD

Sequence ? help Back to Top

Protein Sequence Length: 852 aa Download sequence Send to blast

MLPGIQYNVQ RWSKESHVFQ VLLPHPWEGG ARNAMDGAET TCTSSLILTF PASDCRIRND  60
ATPRTYKDDD RASSPLFFSL PASIERKKNH VQILPPRLGQ STGYWTDRSS AHICKSDVER  120
ICTKVFGDLA DKETKLLDVG SLHLATLMVY NVLGFVARLV SSINMQLFGP HKDPPSLETV  180
NTRLKRRRSV CSRSDTFLAV RGTTADALPL LGLQEYNVRG TKWITREEFQ DLILTWVEKD  240
LRLVFVNKAA LAILGAPLLA VSAKNAGRRV PRMEGAVDKV PTPLLAAVFS VGLLLLQDVQ  300
HGMHAASPVQ ATARENLCLR SRAARTGCCQ RGQRSMGPCM ALSFCLCLRA QVSFFGSAML  360
VSDLVRPWEE IRDDAKRRQS QKSKWNGKAK NRSGTAKRLA VSTPTMRPPP RLSGGHEWMA  420
EGSMPPPGPS RVPAILQTGS GTPIQAHMAS RVPVACRYGD ALCLPVSGNG SPPLLPFYRA  480
SPHSAAGEDA QRQQQQAMSG RWPAPFTPAQ YEELEQQALI YKYLLAGVPV PPELLVPIRR  540
GFVYHQPPRK HASPLDLVVY SDRGVQVSRL LVRAHHITSL TKVVLCVRFA VGYGPPYFGK  600
KVDLEPGRCR RTDGKKWRCS KEAAPDSKYC ERHMQRGRNR SRKPVEPQLV AAPISQPPAQ  660
ANLAGGCQNH TLYSAIAGSG SGAARRGGGA TGVHGLGSAA QMHMDNAAPY ATAAGGGSKD  720
LRYSSYGART LAAEQSQLIS GGTDSWMENS WRLLPSQTST FQVSSYPLYG TLSGLDESTT  780
SSLPKTERQP VSLFGSDFAM QENQTLRPFF DEWPKSRGSW SELADDNSLS SFSATQLSIS  840
IPMGTSTPAP DD

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2463	34	76