PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc03868.1.g00110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 341aa MW: 37271.8 Da PI: 9.9947 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.3 | 7.6e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT Ede l+ +vk +Ggg+W+ ++++ g++R++k+c++rw++yl Zmw_sc03868.1.g00110.1.am.mk 14 RGAWTSKEDEVLAAYVKAHGGGRWREVPQRAGLRRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.2 | 1e-14 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E+ l+++++k+lG++ W++Ia +++ gRt++++k++w++ Zmw_sc03868.1.g00110.1.am.mk 67 RGNISDDEEGLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNST 111 78999*****************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.8E-23 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.164 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.2E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.04E-9 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 65 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.942 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.0E-12 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.22E-9 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MGRRACCAKE GVKRGAWTSK EDEVLAAYVK AHGGGRWREV PQRAGLRRCG KSCRLRWLNY 60 LRPNIKRGNI SDDEEGLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNS TLSRRPGSGA 120 AGSGVSTQVA GYHSTPMASA SCDTGQTSAP VGDRDSGSDG TAAEAVWAPK PVRCTSGLFF 180 LRDAAPQAET RTGGGERSDD CSSSAASASG NADEPCFSVG ADWTDDVRAL ASFLESDEEW 240 GNLLWFSSRA GERVLEVKLE PKGIFILLLQ PGTLHRHLFF THGCHAEARW RLAELDRGRR 300 RAGLTMARCS GAAAQAEGER GRRSRRRGRR RWLFGVANCE A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-24 | 12 | 115 | 25 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 321 | 329 | RRSRRRGRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812125.1 | 1e-103 | anthocyanin regulatory C1 protein-like | ||||
Swissprot | P10290 | 2e-89 | MYBC_MAIZE; Anthocyanin regulatory C1 protein | ||||
TrEMBL | A0A2S3HKW7 | 1e-102 | A0A2S3HKW7_9POAL; Uncharacterized protein | ||||
STRING | Sb10g006700.1 | 7e-99 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |