PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc03866.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 85aa MW: 8967.01 Da PI: 7.9442 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 80.1 | 2.8e-25 | 1 | 47 | 11 | 58 |
ZF-HD_dimer 11 kNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +NhAa++Gg avDGC+Ef+p+ geegt al+CaACgCHR+FHRr v+ Zmw_sc03866.1.g00010.1.am.mk 1 RNHAARMGGLAVDGCREFLPA-GEEGTGGALRCAACGCHRSFHRRVVQ 47 8*******************9.999********************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01566 | 1.5E-20 | 1 | 44 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.3E-23 | 1 | 46 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 21.971 | 1 | 45 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 8.0E-13 | 1 | 42 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 85 aa Download sequence Send to blast |
RNHAARMGGL AVDGCREFLP AGEEGTGGAL RCAACGCHRS FHRRVVQRRC CCFCRDDTDA 60 VAHAPAAPGR WDCSPESTAS STTAS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Inhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649658.1 | 5e-24 | mini zinc finger protein 4 | ||||
Swissprot | Q0J5F8 | 5e-25 | MIF4_ORYSJ; Mini zinc finger protein 4 | ||||
TrEMBL | B6U404 | 1e-25 | B6U404_MAIZE; Mini zinc finger 3 | ||||
STRING | OGLUM08G16680.1 | 2e-23 | (Oryza glumipatula) | ||||
STRING | OS08T0438100-01 | 9e-24 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1431 | 34 | 120 |
Publications ? help Back to Top | |||
---|---|---|---|
|