PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03861.1.g00090.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 262aa MW: 28758.7 Da PI: 6.0795

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03861.1.g00090.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	111.3	1.3e-34	103	189	3	91
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssas 71 ++drhski T++g RdRR+Rls+++a+ fF+Lqd+LGfdk+skt++WLl+q+kpai+ l + s Zmw_sc03861.1.g00090.1.am.mk 103 FRTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRLSEPthrgsgsgdaamS----- 178 689*********************************************************9995555443222111..... PP TCP 72 eceaesssssasnsssgkaa 91 s +++ ++ k+ Zmw_sc03861.1.g00090.1.am.mk 179 -------SPMSA--EIVKET 189 .......11111..111111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.2E-33	104	184	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	34.922	104	162	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000032	Biological Process	regulation of secondary shoot formation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MLPYPNPHHF GISQEQPHPN PATAGFPMGP PVVHPDQQHY DHHFFPGHAH YFNSETLEAV 60 LRPPRAASER EVVGVMPVPQ GASRNSVAGA GGQGNARARK RPFRTDRHSK IRTAQGVRDR 120 RMRLSLDVAR DFFALQDRLG FDKASKTVDW LLTQSKPAID RLSEPTHRGS GSGDAAMSSP 180 MSAEIVKETA AAGSGKGSVE KTASRNSSFM DHSCELDRLV SAAPVLGEYY YEFGEMMGSN 240 EGEGDDDGEY DEDGDFLDNM QY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804518.1	1e-113	transcription factor TB1-like
TrEMBL	A0A0C4MT20	1e-142	A0A0C4MT20_9POAL; Uncharacterized protein (Fragment)
STRING	Pavir.Bb02154.1.p	1e-103	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4052	31	72